FC876930

Overview
NameFC876930
Unique NameFC876930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length777
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10382 contig Ccv1_Contig10382:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876930 vs. ExPASy Swiss-Prot
Match: TRM61_SCHPO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Schizosaccharomyces pombe GN=cpd1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 81/217 (37.33%), Postives = 114/217 (52.53%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN-KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCES 777
            ++ GDL + +   + +  + +     F N++GAF HS+ IGK +G  + S  K GF+YLL PTPELWTL L HRTQI+Y  DI+ +   L +  G  V              +R V P G ++TF++H  R  +A ++F        V     +  RD+   GF D      D+IFLDLP PW AIP     +  D    +C FSPCIEQ+Q S E+
Sbjct:   10 VENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQGFIYLLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGGNTHLTHRDVCKDGFLDT-EVKVDAIFLDLPAPWEAIPHLSNHVNHDKSTRICCFSPCIEQIQHSAEA 225          
BLAST of FC876930 vs. ExPASy Swiss-Prot
Match: TRM61_ASHGO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Ashbya gossypii GN=TRM61 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 86/234 (36.75%), Postives = 123/234 (52.56%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGF---------------PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD--GILCSFSPCIEQVQRSCES 777
            I EGDLV+V+     +K +++     F  R+G+F H D +G+P+GS +      SN+ GF+++L PTPELWTL L HRTQI+Y  D S+++  L   P   V              AR V   G +++++FH  R   A  +F+  G+     VT+  RD+  +GF                D  S  AD IFLDLP PW AIP    ++ +D    LC FSPCIEQV ++ E+
Sbjct:   11 IAEGDLVLVWISRGNVKQLRIKSGEVFNTRYGSFAHDDIVGRPYGSQIGVRTKGSNRFGFIHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLGCSPQSRVIEAGTGSGSFSHAFARTV---GQLFSYEFHHMRYEQALAEFQEHGLIADGNVTITHRDVCQKGFLIKAGDTTSYEFLEGQDSVSVNADCIFLDLPAPWEAIPHLDAVIAKDRTARLCCFSPCIEQVDKTLEA 241          
BLAST of FC876930 vs. ExPASy Swiss-Prot
Match: TRM61_CANGA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida glabrata GN=TRM61 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.211e-33
Identity = 85/232 (36.64%), Postives = 120/232 (51.72%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV-----FSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGF---------------PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCE 774
            I+EGDL +++   D +K V +  N  F  R+G+F H D IGKP+GS +      + K  FV+++ P+PELWTL L HRTQI+Y  D S+++  L   P   V              AR+V   G +Y+++FH  R   A E+F+  G+    T+   RD+   GF                ++    AD IFLDLP PW AIP    ++  D    LC FSPCIEQV ++ E
Sbjct:   12 IQEGDLALIWISRDNIKPVTINANETFNTRYGSFPHKDMIGKPYGSQIAIRTKVAKKFAFVHVMQPSPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPNSRVIEAGTGSGSFSHAFARSV---GQLYSYEFHPVRYEQATEEFKEHGLLDKNTIITHRDVCKDGFTIKKTDETSYQFKADEEQLQIKADVIFLDLPAPWEAIPHIDSVIDNDEKVGLCCFSPCIEQVDKTLE 240          
BLAST of FC876930 vs. ExPASy Swiss-Prot
Match: TRM61_YARLI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Yarrowia lipolytica GN=TRM61 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 79/216 (36.57%), Postives = 125/216 (57.87%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSA-FQNRFGAFKHS--DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCES 777
            I++GDLV+ +     +K + V +    F  R+GAF H   D  G   GSM   +K GF++L+ PTPELWTL L HRTQI+Y  D S+++  L++ PG  V              +R+    G VY+++FHE+R   A+++FER  +++ +    RD+   GF  E   + A ++FLDLP PW AIP  ++++ +  +  +C FSPC EQV ++ ++
Sbjct:    9 IEDGDLVLGWMTRTAIKPIVVEKKEGLFNTRYGAFPHRNMDKYGAQLGSM---SKQGFIHLIHPTPELWTLSLPHRTQIVYTTDSSYIVQRLKIRPGSTVIESGTGSGSFTHAISRSAGLAGKVYSYEFHEERYNLAKQEFERHQLTNVIPTH-RDVCNDGFDIENIDVNATAVFLDLPAPWTAIPHLERVIDRSVVSRVCCFSPCFEQVVKAVQA 220          
BLAST of FC876930 vs. ExPASy Swiss-Prot
Match: TRM61_ASPFU (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Aspergillus fumigatus GN=trm61 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 91/284 (32.04%), Postives = 127/284 (44.72%), Query Frame = 1
Query:  157 GDLVIVYERHD----CMKAVKVCQNSAFQN------RFGAFKHSDWIGKPFGSMVF----------------------------SNK--------------GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAV-------APT------GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEFSG---LADSIFLDLPQPWLAI-------PS-AKKMLKQDG--ILCSFSPCIEQVQRS 768
            GDL +++ R D     +  ++  +N  ++       RFG+F HS  I +P+GS +                             SNK               GF++LL PTPELWT  L HRTQ++Y  D S+++  L + PG  +               RAV       AP       G V +F+FH QRA   RE+    G+ + V V  RD+   GF   D  +G    A++IFLDLP PWLA+       PS A+  L       +C+FSPCIEQVQR+
Sbjct:   15 GDLALLHLRRDQTIPTILKLEDDENQGYKEGKVTNTRFGSFPHSTLIDQPWGSQIVASVVDTGSRGRKNQSSKKRKADDLDTPTSNKDEAQSSPGTPRAAASGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLCVRPGSTIIEAGAGSGSFTHASVRAVFNGYPSEAPAAKKRRLGKVCSFEFHAQRAQRIREEIHDHGLDALVEVTHRDVYEDGFLLGDPKTGKSPKANAIFLDLPAPWLALKHLVRRPPSGAESPLDPSSPVYICTFSPCIEQVQRT 298          
BLAST of FC876930 vs. ExPASy Swiss-Prot
Match: TRM61_ASPOR (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Aspergillus oryzae GN=trm61 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.653e-21
Identity = 76/244 (31.15%), Postives = 105/244 (43.03%), Query Frame = 1
Query:  235 RFGAFKHSDWIGKPFGSMVFSNK--------------------------------------GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAV--------APT-----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEFSG---LADSIFLDLPQPWLAIPSAKKMLKQDG----------ILCSFSPCIEQVQRS 768
            RFG+F H     +P+GS + ++K                                       GF++LL PTPELWT  L HRTQ++Y  D S+++  L   PG  V               RAV         PT     G V +F+FH QRA   R +  + G+   V V  RD+   GF   D  +G    A++IFLDLP PWLA+    +   +             +C+FSPC+EQVQR+
Sbjct:   51 RFGSFPHITLCDQPWGSQIIASKVDTGSRGRTQKMKRKADELDSSTQAEDKPSPQTPVAASSGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLRARPGSTVIEAGAGSGSFTHASVRAVFNGYPSDDQPTKKRRLGKVCSFEFHAQRAEKVRVEVNQHGLDGLVEVTHRDVYEDGFLLGDPKTGKSPKANAIFLDLPAPWLALKHLVRNPPEGTESPLDPTSPVYICTFSPCLEQVQRT 294          
The following BLAST results are available for this feature:
BLAST of FC876930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRM61_SCHPO8.450e-3437.33tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASHGO8.450e-3436.75tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANGA3.211e-3336.64tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YARLI2.081e-3236.57tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASPFU6.711e-2332.04tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASPOR1.653e-2131.15tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BH07RM1 EHR Citrus clementina cDNA clone KN0AAN3BH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876930 ID=FC876930; Name=FC876930; organism=Citrus clementina; type=EST; length=777bp
TTCTCTCTGCCTCTCAGATTTTGCTGTCTGACTTCCTGAACCCGTCACAA
TTTTATTTGCAGATAATTGCTTGGTTTTAGTAACTCTTTGATAATTTAAA
GGATGTTGCCAACTGATCCAACGAAAAAGATATCCTTTACTCGATGCATT
AAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGACTGCATGAAAGC
TGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTTTTGGTGCGTTTA
AACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATGGTGTTCAGTAAC
AAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGAGTTATGGACTCT
GGTTTTGAGCCATAGAACTCAGATACTTTACATTGCAGATATTAGCTTTG
TCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTTCTGGAGTCAGGG
ACTGGAAGTGGATCTTTGACAACCTCTCTTGCAAGGGCTGTAGCTCCTAC
AGGACATGTCTATACTTTTGATTTTCATGAGCAAAGGGCTGCCTCAGCTA
GGGAAGACTTTGAGAGGACAGGAGTGAGCAGTTTTGTTACTGTGGGTGTT
AGAGATATCCAGGGTCAGGGATTTCCTGATGAATTTAGTGGGTTAGCTGA
TTCTATATTTCTGGACCTACCTCAGCCCTGGCTGGCAATTCCATCAGCAA
AGAAAATGTTGAAACAAGATGGGATTCTGTGTTCTTTCTCACCATGTATT
GAGCAAGTGCAGCGCTCATGTGAATCT
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