FC876942

Overview
NameFC876942
Unique NameFC876942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig323 contig Ccv1_Contig323:181..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_SYNPX (Guanylate kinase OS=Synechococcus sp. (strain WH8102) GN=gmk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLLGL 340
            GN YGT    VE    AG+  +L+I++ GAR VR S   A  IF+ PPS EELE R+R  GT++ED I ++L  A+EE+    + G FD ++ ND L++    L+ L+GL
Sbjct:   75 GNCYGTPRAPVEQQLQAGRPVLLEIELEGARQVRRSFSKARQIFLAPPSFEELERRIRGRGTDSEDAIQQRLLRAREEL---SAQGEFDAVVVNDDLDQALLKLEGLMGL 181          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_SYNJB (Guanylate kinase OS=Synechococcus sp. GN=gmk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            GN YGT  E V    + G+  +L+I++ GAR VR    DAI IF+CPPS+EELE R+R  G ++E  I ++L  A++E++   +   FD+++ ND LE+  + L+ LL
Sbjct:  105 GNFYGTPREIVFQKLNQGQDVLLEIELAGARQVRQQYPDAIRIFLCPPSLEELERRIRERGQDSEASIERRLEQARKELD---AQDEFDYVIVNDNLEQALQELEALL 209          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_DESDG (Guanylate kinase OS=Desulfovibrio desulfuricans (strain G20) GN=gmk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLK 325
            VHGN YGT +E    +   G+  + DIDV GA  +R S     ++FI PPS  ELE RLRA GT+ ED I ++L NA+ E++    +  F+  + ND LE+ Y+ L+
Sbjct:   78 VHGNFYGTPLEDTRQLLARGRDVLFDIDVQGAAQLRGSLKQGCYVFILPPSGAELERRLRARGTDPEDTIRRRLANARRELQ---QAHWFNAWIVNDNLEQAYDELR 181          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_BACSK (Guanylate kinase OS=Bacillus clausii (strain KSM-K16) GN=gmk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 43/108 (39.81%), Postives = 72/108 (66.67%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            GN YGT ++ V+   +AGK  IL+I+V GA+ VR    + +FIF+ PPS++EL +R+   GTETED I +++  A+EEI+      ++D+++ ND++E   E +K ++
Sbjct:   79 GNYYGTPIDYVQETINAGKDIILEIEVQGAQKVRTVFPEGVFIFLAPPSLKELRDRIVGRGTETEDIINERMTVAKEEID---LMTMYDYVVENDKVEWAVERIKAIV 183          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_PELCD (Guanylate kinase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gmk PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLLGLDGSIAA 358
            VHGN YGT++  ++   + G+  +LDID  GA  ++ +  D +FIFI PPS EELE RLR   T+T + I ++L NA+ EI   +    +D+++ N+ L    E  K ++  +G  A+
Sbjct:   76 VHGNCYGTALATLQEAREQGQDLLLDIDCQGAAQLKRNCPDDVFIFILPPSFEELERRLRGRNTDTAEVIARRLDNARREI---RELVWYDYLIVNEDLPRAVEEFKSIILAEGCRAS 190          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_DECAR (Guanylate kinase OS=Dechloromonas aromatica (strain RCB) GN=gmk PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLLGLDG 346
            VHGN YGTS + +     AG+  +L+ID  GA+ VRA    AI +FI PPSMEEL  RL   GT++ D I ++L  AQ E+   +  G FD+++ NDQL +  ++L+ ++   G
Sbjct:   74 VHGNFYGTSKKWIADQLAAGRDVLLEIDWQGAQQVRALFPQAIGVFILPPSMEELTRRLTGRGTDSPDVIDRRLAAAQAEM---RHVGEFDYVIINDQLAQALDDLRAVVRASG 184          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_CLOPS (Guanylate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=gmk PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            V+GN YGT   +VE + D GK  IL+ID+ GA  V+    D +FIFI PPSMEEL++R+   G+ET + ++ + ++A +EI        +++ + ND +E+  + ++ +L
Sbjct:   82 VYGNYYGTPKSSVEKMLDEGKNVILEIDIQGALKVKEKATDGVFIFILPPSMEELKQRIIKRGSETPESLMTRFKSAYKEINYVSK---YNYAVVNDNVEDAVKKIEAIL 188          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_CLOPE (Guanylate kinase OS=Clostridium perfringens GN=gmk PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            V+GN YGT   +VE + D GK  IL+ID+ GA  V+    D +FIFI PPSMEEL++R+   G+ET + ++ + ++A +EI        +++ + ND +E+  + ++ +L
Sbjct:   82 VYGNYYGTPKSSVEKMLDEGKNVILEIDIQGALKVKEKATDGVFIFILPPSMEELKQRIIKRGSETPESLMTRFKSAYKEINYVSK---YNYAVVNDNVEDAVKKIEAIL 188          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_CLOP1 (Guanylate kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=gmk PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            V+GN YGT   +VE + D GK  IL+ID+ GA  V+    D +FIFI PPSMEEL++R+   G+ET + ++ + ++A +EI        +++ + ND +E+  + ++ +L
Sbjct:   82 VYGNYYGTPKSSVEKMLDEGKNVILEIDIQGALKVKEKATDGVFIFILPPSMEELKQRIIKRGSETPESLMTRFKSAYKEINYVSK---YNYAVVNDNVEDAVKKIEAIL 188          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_BACHD (Guanylate kinase OS=Bacillus halodurans GN=gmk PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            GN YGT ++ V    D+GK  IL+I+V GA  VR    + +FIF+ PPS+ EL  R+   GTETE+ I K++  A+EEIE  K    +D+++ ND++E   + +K ++
Sbjct:   79 GNYYGTPIQYVRETIDSGKDIILEIEVQGALKVRERFPEGVFIFLMPPSLAELRSRIVGRGTETEEVINKRMNVAKEEIEMMKK---YDYVVENDEVELAVDRIKAIV 183          
The following BLAST results are available for this feature:
BLAST of FC876942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
KGUA_SYNPX1.373e-1643.64Guanylate kinase OS=Synechococcus sp. (strain WH81... [more]
KGUA_SYNJB1.373e-1641.67Guanylate kinase OS=Synechococcus sp. GN=gmk PE=3 ... [more]
KGUA_DESDG1.793e-1642.06Guanylate kinase OS=Desulfovibrio desulfuricans (s... [more]
KGUA_BACSK2.342e-1639.81Guanylate kinase OS=Bacillus clausii (strain KSM-K... [more]
KGUA_PELCD3.059e-1637.29Guanylate kinase OS=Pelobacter carbinolicus (strai... [more]
KGUA_DECAR3.995e-1642.11Guanylate kinase OS=Dechloromonas aromatica (strai... [more]
KGUA_CLOPS3.995e-1637.27Guanylate kinase OS=Clostridium perfringens (strai... [more]
KGUA_CLOPE3.995e-1637.27Guanylate kinase OS=Clostridium perfringens GN=gmk... [more]
KGUA_CLOP13.995e-1637.27Guanylate kinase OS=Clostridium perfringens (strai... [more]
KGUA_BACHD3.995e-1640.74Guanylate kinase OS=Bacillus halodurans GN=gmk PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DB06RM1 EHR Citrus clementina cDNA clone KN0AAN1DB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876942 ID=FC876942; Name=FC876942; organism=Citrus clementina; type=EST; length=714bp
CTCTGTTCATGGAAATCTTTATGGAACCAGTGTTGAAGCTGTGGAGGCGG
TAGCAGATGCTGGAAAGAGATGCATACTTGATATTGATGTTCCAGGGGCG
AGGTCTGTGAGGGCGAGTCCTCTTGATGCTATTTTCATATTTATCTGTCC
ACCTTCAATGGAGGAGCTTGAGGAGCGCCTCCGTGCAACAGGAACTGAAA
CAGAGGATCATATCCTAAAACAACTCAGAAATGCCCAGGAAGAGATTGAG
CCAGGGAAATCCTCCGGCATCTTTGATCATATATTGTACAATGATCAACT
TGAAGAGTGTTACGAGAACCTTAAGAAACTCTTGGGACTTGATGGGAGTA
TTGCTGCAACCCATCACACCTCACCCAAAGGGATTGATTTGCCAGCTGAT
CATTCAGTATCAAAAGCTGATAACAAAGTCATCATAAAGTGTGGGGCTGC
TGAAGGAAAAACATCAAAGAACTTAATGGTTTTGGATGTATCCTCACTGA
AAGGCGGAGCACCTGGACGGACTAGAGGGCTTCAAGTTTATACAGTTGAT
TCATTTTCAGATGGTTTAAATGGGGTCAATAAGTTGAGCTAATAGCTCCC
ATCCTCATCGACGCTAACGTGGTTTCTCATTTAAAATATTTCTCACAGCT
CAACTTATATAATTTAGAAAAAAAAAGAGCCTTGATGAAGCTCTACCTGT
GATTTCGTAAAAAA
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