FC876942

Overview
NameFC876942
Unique NameFC876942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig323 contig Ccv1_Contig323:181..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_METFK (Guanylate kinase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gmk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            VHG  YGTS   V +    G   IL+ID  GA+ VR+   DAI IFI PPSME LE+RL     ++ + I ++L  A+EE+   +    FD++  ND+ E   E+L+ ++
Sbjct:   74 VHGAYYGTSQSTVNSALAEGYDLILEIDWQGAQQVRSLYADAISIFILPPSMEALEQRLNNRAQDSAEVIARRLAAAREEM---RHVTEFDYVTINDRFEHALEDLRAII 180          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_LACLA (Guanylate kinase OS=Lactococcus lactis subsp. lactis GN=gmk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            GN YGT +  V    D GK   L+I+V GA  V+    D +F+F+ PP +EEL  RL   GT++ + I  +L  A+EEI   +    +D+ + ND++E   E +KK++
Sbjct:   78 GNYYGTPLTYVNQTLDEGKDVFLEIEVQGALQVKEKVPDGVFVFLTPPDLEELRGRLVGRGTDSAEVIASRLEKAKEEI---RLMSEYDYAVVNDKVELAAERVKKII 182          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_DESPS (Guanylate kinase OS=Desulfotalea psychrophila GN=gmk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASP-LDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLLGLDGSIAATHHTSPKGIDL 391
            VH N YGTS EAV A    G   +LDIDV GA  +  S  L A +IFI PP +  LEERLR  G+++E+ I  ++ NA  E+    SS  +D+++ ND L +    LK ++  +    A    +P G+ +
Sbjct:   75 VHKNYYGTSREAVMAQLSEGVDVVLDIDVQGATILMESASLPATYIFIAPPDLSVLEERLRKRGSDSEETIKLRMGNAAGEM---LSSRKYDYLIVNDDLAQASTLLKSIIWAE---RAKSRRTPAGLPI 198          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_STRT2 (Guanylate kinase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=gmk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            GN YGT +  V    D G    L+I+V GA  V+    DA+FIF+ PP + ELEERL   GT++E+ I +++  A+EEI        +D+ + ND++    E +K+++
Sbjct:   79 GNYYGTPLAYVNETLDKGIDVFLEIEVQGALQVKKKVPDAVFIFLTPPDLNELEERLVGRGTDSEEVIAQRIERAREEI---ALMSEYDYTIVNDEVPLAAERVKRVI 183          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_STRT1 (Guanylate kinase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=gmk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            GN YGT +  V    D G    L+I+V GA  V+    DA+FIF+ PP + ELEERL   GT++E+ I +++  A+EEI        +D+ + ND++    E +K+++
Sbjct:   79 GNYYGTPLAYVNETLDKGIDVFLEIEVQGALQVKKKVPDAVFIFLTPPDLNELEERLVGRGTDSEEVIAQRIERAREEI---ALMSEYDYTIVNDEVPLAAERVKRVI 183          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_BACSU (Guanylate kinase OS=Bacillus subtilis GN=gmk PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            GN YGT V+ VE     GK   L+I+V GA  VR +  + +FIF+ PPS+ EL+ R+   GTET+  I  +++ A+ EIE       +D+++ ND +E   + +K ++
Sbjct:   79 GNYYGTPVDYVEQTLQDGKDVFLEIEVQGALQVRNAFPEGLFIFLAPPSLSELKNRIVTRGTETDALIENRMKAAKAEIE---MMDAYDYVVENDNVETACDKIKAIV 183          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_ZYMMO (Guanylate kinase OS=Zymomonas mobilis GN=gmk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSV-RASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLLGLD 343
            V  N YGT    VE +   G+  + DID  GA+ + + +  D I ++I PPS EELE RLR  GT++E+ I K++  A  EI        +D++L ND ++EC + +K +L ++
Sbjct:   83 VFDNRYGTPRAPVEEMLHKGQDVLFDIDWQGAQQLWQQASGDTIRVYILPPSFEELERRLRGRGTDSEEVIQKRMARAASEISHWDG---YDYVLINDDMDECVKQVKNILTVE 193          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_LACDA (Guanylate kinase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=gmk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 2
Query:   11 GNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            GNLYGT +  V+ +  AGK  +L+IDV GAR+VR    + +FIF+ PP +  L +RL   GTE+ED I  ++  A++EI   +    +D+ + ND +     ++K ++
Sbjct:   79 GNLYGTPLGPVKEMLAAGKDVLLEIDVNGARTVRQQMPEGVFIFLTPPDLHTLRDRLEHRGTESEDVIRGRIAQARKEILVMQD---YDYAVVNDTVANAVNHIKAIV 183          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_CHRSD (Guanylate kinase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gmk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPLDAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            V  N YGTS  AV+A+ DAG+  IL+ID  GAR VR +  +A+ IFI PPS E L  RL   GT+    I +++R+A +E+        ++H++ ND  +   + L  L+
Sbjct:   80 VFDNYYGTSRAAVQALLDAGQDVILEIDWQGARQVREAFDEAVSIFILPPSREALHARLAGRGTDDAATIARRMRDAVDEMSHYDE---YEHVIINDTFDHALDELSCLV 186          
BLAST of FC876942 vs. ExPASy Swiss-Prot
Match: KGUA_RHIME (Guanylate kinase OS=Rhizobium meliloti GN=gmk PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    5 VHGNLYGTSVEAVEAVADAGKRCILDIDVPGARSVRASPL-DAIFIFICPPSMEELEERLRATGTETEDHILKQLRNAQEEIEPGKSSGIFDHILYNDQLEECYENLKKLL 334
            VHGN YGT  +AVE     G+  + DID  GA+ ++     D + IFI PPSM EL+ RL     ++E+ I  +L N++ EIE  +    +D+I+ ND L+  + +++ ++
Sbjct:   86 VHGNYYGTPRDAVEKAMGEGRDMLFDIDWQGAQQLQEKMAGDVVSIFILPPSMAELQSRLHRRAEDSEEVIATRLANSRAEIEHWRE---YDYIVVNDDLDRAFSSVRAIV 193          
The following BLAST results are available for this feature:
BLAST of FC876942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
KGUA_METFK1.421e-1340.00Guanylate kinase OS=Methylobacillus flagellatus (s... [more]
KGUA_LACLA1.421e-1337.04Guanylate kinase OS=Lactococcus lactis subsp. lact... [more]
KGUA_DESPS1.421e-1338.46Guanylate kinase OS=Desulfotalea psychrophila GN=g... [more]
KGUA_STRT22.424e-1337.04Guanylate kinase OS=Streptococcus thermophilus (st... [more]
KGUA_STRT12.424e-1337.04Guanylate kinase OS=Streptococcus thermophilus (st... [more]
KGUA_BACSU2.424e-1337.04Guanylate kinase OS=Bacillus subtilis GN=gmk PE=3 ... [more]
KGUA_ZYMMO3.166e-1336.84Guanylate kinase OS=Zymomonas mobilis GN=gmk PE=3 ... [more]
KGUA_LACDA3.166e-1337.04Guanylate kinase OS=Lactobacillus delbrueckii subs... [more]
KGUA_CHRSD3.166e-1339.09Guanylate kinase OS=Chromohalobacter salexigens (s... [more]
KGUA_RHIME4.135e-1336.04Guanylate kinase OS=Rhizobium meliloti GN=gmk PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DB06RM1 EHR Citrus clementina cDNA clone KN0AAN1DB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876942 ID=FC876942; Name=FC876942; organism=Citrus clementina; type=EST; length=714bp
CTCTGTTCATGGAAATCTTTATGGAACCAGTGTTGAAGCTGTGGAGGCGG
TAGCAGATGCTGGAAAGAGATGCATACTTGATATTGATGTTCCAGGGGCG
AGGTCTGTGAGGGCGAGTCCTCTTGATGCTATTTTCATATTTATCTGTCC
ACCTTCAATGGAGGAGCTTGAGGAGCGCCTCCGTGCAACAGGAACTGAAA
CAGAGGATCATATCCTAAAACAACTCAGAAATGCCCAGGAAGAGATTGAG
CCAGGGAAATCCTCCGGCATCTTTGATCATATATTGTACAATGATCAACT
TGAAGAGTGTTACGAGAACCTTAAGAAACTCTTGGGACTTGATGGGAGTA
TTGCTGCAACCCATCACACCTCACCCAAAGGGATTGATTTGCCAGCTGAT
CATTCAGTATCAAAAGCTGATAACAAAGTCATCATAAAGTGTGGGGCTGC
TGAAGGAAAAACATCAAAGAACTTAATGGTTTTGGATGTATCCTCACTGA
AAGGCGGAGCACCTGGACGGACTAGAGGGCTTCAAGTTTATACAGTTGAT
TCATTTTCAGATGGTTTAAATGGGGTCAATAAGTTGAGCTAATAGCTCCC
ATCCTCATCGACGCTAACGTGGTTTCTCATTTAAAATATTTCTCACAGCT
CAACTTATATAATTTAGAAAAAAAAAGAGCCTTGATGAAGCTCTACCTGT
GATTTCGTAAAAAA
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