FC876944

Overview
NameFC876944
Unique NameFC876944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 57/181 (31.49%), Postives = 83/181 (45.86%), Query Frame = -1
Query:  117 SNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEEFLFSGAFDWKIILIGYAGGLVAGLVFGFNFSTGIFGWILGKLGRQQKATRGRGG 659
            S+    G +P+ +S L               HIP  LGN+++L  LDLS NK +G IP  + ++  L FFNV  N L+G +P       F+++ F GNS LCG  +S  C +  +PS E   + S   L +      IILI     L+  L+        +   +L K   + KA  G  G
Sbjct:  278 SHNRIRGTLPSELSKLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPISISDLESLNFFNVSYNNLSGPVPT-LLSQKFNSSSFVGNSLLCGYSVSTPCPTLPSPSPEKERKPSHRNLSTK----DIILIASGALLIVMLIL-----VCVLCCLLRKKANETKAKGGEAG 448          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 41/122 (33.61%), Postives = 58/122 (47.54%), Query Frame = -1
Query:  297 LSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDH 662
            LS    +G+IP  +  +                IP  LG L N+  LDLS N+F+G IP  +  +T L   ++ +N L+G++P+   F TF +  F  NS LCG PL   C SG       H
Sbjct:  670 LSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNS-LCGYPLPLPCSSGPKSDANQH 790          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 41/122 (33.61%), Postives = 58/122 (47.54%), Query Frame = -1
Query:  297 LSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDH 662
            LS    +G+IP  +  +                IP  LG L N+  LDLS N+F+G IP  +  +T L   ++ +N L+G++P+   F TF +  F  NS LCG PL   C SG       H
Sbjct:  670 LSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNS-LCGYPLPIPCSSGPKSDANQH 790          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 44/126 (34.92%), Postives = 57/126 (45.24%), Query Frame = -1
Query:  285 LSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDHTEGS 662
            LS     G +PA   NL+               IP+ LG L NL SL L+NNK  G+IP Q+     L   NV  N L+G++P  K F  F    F GN  LCG  +   C  G  P +   + G+
Sbjct:  461 LSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLCGNWVGSIC--GPLPKSRVFSRGA 584          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 49/156 (31.41%), Postives = 69/156 (44.23%), Query Frame = -1
Query:  195 LSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEEFLFSGAFDWKIILIGYAGGLVAGLVFGF 662
            LS  +  G+IP     +                IP   G L  +  LDLS+N   G +P  +  ++FL+  +V +N LTG +P G Q  TF  T +  NSGLCG PL   C SG  P+   H    ++ +              A G+ AG+VF F
Sbjct:  646 LSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPLPP-CSSGSRPT-RSHAHPKKQSI--------------ATGMSAGIVFSF 785          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 41/130 (31.54%), Postives = 59/130 (45.38%), Query Frame = -1
Query:  291 ILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDHTE 680
            +L  + +S    +G I   + NL                IP  LGNL+ ++ LDLS N  SG IP  +  +  L  FNV  N L+GV+P       F ++ F  N  LCG PL   C S  A +   +++
Sbjct:  381 VLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGSSAFSNNPFLCGDPLVTPCNSRGAAAKSRNSD 510          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 43/110 (39.09%), Postives = 57/110 (51.82%), Query Frame = -1
Query:  336 LSNKSFDGAIPASISNLKXXXXXXXXXXXXXXH-IPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSK 662
            LS  S  G IP  I  L+                IPS +G L+ LE+LDLS+N+ +G +P  V ++  L + NV  N L G L   KQF  +    F GN+GLCG PLS+
Sbjct:  750 LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLK--KQFSRWPADSFLGNTGLCGSPLSR 857          
The following BLAST results are available for this feature:
BLAST of FC876944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
IMK3_ARATH7.830e-1231.49Probable leucine-rich repeat receptor-like protein... [more]
BRI1_SOLPE1.023e-1133.61Systemin receptor SR160 OS=Solanum peruvianum PE=1... [more]
BRI1_SOLLC1.336e-1133.61Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]
ERL1_ARATH1.744e-1134.92LRR receptor-like serine/threonine-protein kinase ... [more]
BRL3_ARATH1.744e-1131.41Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]
Y1124_ARATH5.076e-1131.54Probable LRR receptor-like serine/threonine-protei... [more]
GSO1_ARATH6.629e-1139.09LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DB09RM1 EHR Citrus clementina cDNA clone KN0AAN1DB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876944 ID=FC876944; Name=FC876944; organism=Citrus clementina; type=EST; length=710bp
TTTTTTTTTTTAAGGACAAATGTAAGGATCCATTTAAAAAAAAAACCACC
AACATTACAATGACAAAATTAAAAACGAAAATCACAACAACATTATAATT
GCATTCAGTTTCTACGTCCCCCCCTCCCCCTTGTTGCCTTTTGCTGCCTT
CCCAACTTCCCCAAAATCCATCCAAAAATTCCTGTGCTGAAGTTGAACCC
GAAAACCAATCCTGCCACAAGTCCGCCCGCGTACCCAATCAAAATGATTT
TCCAATCAAAAGCACCTGAAAACAAAAACTCCTCCGAGCCTTCAGTATGA
TCTTCATTTGAAGGAGCTTCACCACTCTCACATCCTTTGGACAAAGGCTT
TCCACACAATCCTGAGTTGCCGTCAAAAAAAGTGTTGTCAAATGTAACAA
ATTGCTTTCCTTGTGGTAAAACCCCTGTAAGGTAATTGTCCCAAACATTG
AAAAATGCGAGAAATGTGACCTCAACCACTTGTTGAGGAATCCGTCCTGA
AAACTTGTTATTTGAGAGATCTAGTGATTCCAAATTTGTTAGATTACCCA
AACATGAAGGAATATGGCCTTGGAGATTATTGTTGTGAAGGTTTAGGACT
TGAAGTCCCTTTAAATTTGAAATTGATGCTGGAATCGCCCCATCAAAACT
CTTGTTTGAGAGAATAATGCCCGCGAGGATATCCGGAATCTTGTTATATG
CCATCATTCG
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