FC876960

Overview
NameFC876960
Unique NameFC876960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_DANRE (Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.639e-52
Identity = 112/237 (47.26%), Postives = 147/237 (62.03%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYV-----------QNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD-----KETMEDWDQETLEKVVESKNKEYQQNK-PTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAE 706
            MPPK+ +      K +  KK+KI+EDKTFGLKNK  +K  QK++           QN +Q    + +++K                LN+LFK  V+  KV  GVDPKS+LC F+K GQC KG KCKFSHDL+++RK EK  +Y D RD     K+TME+WD++ LE+VV  K+ E ++ K  T IVCKYFL+A+E  +YGWFWVCP GG +C YRHALP G+VLK   K   + E E
Sbjct:    1 MPPKKPAPAAANKKTQEKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTK-----KKDDKKKELSELNELFKPVVAAQKVSKGVDPKSVLCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEEVVNKKHGEAEKKKAKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPVGFVLKKDKKNEEKNEEE 231          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 101/216 (46.76%), Postives = 138/216 (63.89%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR---DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEA 703
            MPPK+  +A+ A K+K   DKTFG+KNKN+S  VQKY++ ++    PK ++ ++                  LF   V+  +V  GVDPKS++C  +K G C KG KCKFSHDLNV R+ EK D+Y D R   + +TM++WD+E L KV+ SK+   +    TD VCKYF+EAVE  +YGWFW+CPNGG  C YRH+LP G+VLK+  +  LE E+
Sbjct:    1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLNVGRRMEKKDLYQDTRSEKENDTMDNWDEEKLRKVILSKHGNPKTT--TDKVCKYFIEAVENGKYGWFWICPNGGDKCMYRHSLPEGFVLKTNEQKRLERES 213          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEEL (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 5.502e-50
Identity = 103/221 (46.61%), Postives = 136/221 (61.54%), Query Frame = 2
Query:   65 MPPKQQS---KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR----DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAE 706
            MPPKQQ    K+E  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+D R    D+ET E+WD + L +VV  KNK        DIVCKYFLEAVE  +YGWFW CPNGG+ C YRH LP GYVLK + KA+ +++ +
Sbjct:    1 MPPKQQGPSKKSEQKRKEKVIEDKTFGLKNKKGNKN-QKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDELLDIANLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADSREVEKDEETNENWDSDKLNEVVNKKNKNKHM---IDIVCKYFLEAVENNKYGWFWECPNGGEKCQYRHCLPEGYVLKKERKAMEQQKED 217          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROME (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.186e-50
Identity = 106/213 (49.77%), Postives = 133/213 (62.44%), Query Frame = 2
Query:   62 KMPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQ-----PKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKET-MEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMK 682
            K PP    K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ     P+ D  K                L  +FK   +Q KV  G DPKS++C F+K G C KG KCKFSHDL+ + K EK  IY D RD++  M +WD   L++VVE K+   +Q   TDI+CK+FLEAVEK +YGWFW CPNGGK C YRHALP GYVLK   K
Sbjct:    5 KAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQSGGQHPRQDGDKRKEEKEKKLAEQREMAL--IFKPVQTQ-KVEKGTDPKSVVCAFFKQGTCTKGDKCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKLKEVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYGWFWECPNGGK-CIYRHALPAGYVLKRDKK 212          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROPS (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 101/215 (46.98%), Postives = 132/215 (61.40%), Query Frame = 2
Query:   65 MPPKQ-----QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKI--AVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKET--MEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMK 682
            MPPK+       K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ      +                L ++  I   V   KV  G DPKS++C F+K G C KG KCKFSHDL+++ K EK  +Y D RD E   M +WD   L++VV+ K+ E ++   T+I+CK+FLEAVEK +YGWFW CPNG K C YRHALPPGYVLK   K
Sbjct:    1 MPPKKAPAGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQAGGHHPRQDGDKKKDEKEKKLADLREMASIFKPVQTQKVDKGTDPKSVVCAFFKQGLCTKGDKCKFSHDLSLENKVEKRSMYVDMRDNEDDLMTNWDDAKLKEVVDKKHSEEKRRPTTEIICKFFLEAVEKSKYGWFWECPNGEK-CIYRHALPPGYVLKRDKK 213          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEBR (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.832e-45
Identity = 101/222 (45.50%), Postives = 128/222 (57.66%), Query Frame = 2
Query:   65 MPPKQ--QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQ------------QNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKAL 688
            MPPKQ    KAE  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+DK    T E+WD+E L++VV  KNK                 K  + VCKYFLEAVE  +YGWFW CPNGG  C YRH LP GYVLK   KA+
Sbjct:    1 MPPKQAPSKKAENKRKEKVIEDKTFGLKNKKGNKN-QKFVAQIENQVRNNNTRMDLVRQQEAAKKKEKDELLDIQNLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADK----TNENWDKEKLDEVVNKKNKGGHVIDIVRDFLMIFALKNQEKVCKYFLEAVENNKYGWFWECPNGGDKCQYRHCLPEGYVLKKDRKAM 217          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: MEP33_SCHPO (mRNA export protein 33 OS=Schizosaccharomyces pombe GN=mep33 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 71/217 (32.72%), Postives = 97/217 (44.70%), Query Frame = 2
Query:   65 MPPKQQSKAE-----LAKKQ--KIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQ-SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKP---TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMK 682
            MPPK+ +K +      AKK   K   D TFGLKNKN+S  VQ  ++ ++QN      + +K                     ++A     +P    P++ L    +                   ++ +KID+YSD RD++T        LEK            +P   TDIVCK+FLEA E  +YGW W CPNG   C Y+HALP GYVL    K
Sbjct:    1 MPPKKAAKGKGDPGKAAKKDPTKKAADATFGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAEAAKAEVAALFNAIPKKQTPQNFLTRKEEV------------------KESQKIDLYSDVRDQQT-----DLPLEK------------RPWINTDIVCKFFLEACETGKYGWLWQCPNGNMTCIYKHALPYGYVLSRDKK 182          
The following BLAST results are available for this feature:
BLAST of FC876960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ZC3HF_DANRE2.639e-5247.26Zinc finger CCCH domain-containing protein 15 OS=D... [more]
TMA46_YEAST3.446e-5246.76Translation machinery-associated protein 46 OS=Sac... [more]
ZC3HF_CAEEL5.502e-5046.61Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROME7.186e-5049.77Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROPS1.038e-4846.98Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEBR1.832e-4545.50Zinc finger CCCH domain-containing protein 15 homo... [more]
MEP33_SCHPO5.023e-1932.72mRNA export protein 33 OS=Schizosaccharomyces pomb... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3CA06RM1 EHR Citrus clementina cDNA clone KN0AAN3CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876960 ID=FC876960; Name=FC876960; organism=Citrus clementina; type=EST; length=708bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAAGAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAGG
TTGTGGAATCAAAGAATAAGGAATACCAGCAGAACAAACCTACAGATATT
GTTTGTAAATACTTTTTAGAAGCTGTGGAGAAGAAACAGTATGGCTGGTT
TTGGGTCTGCCCAAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTC
CTCCTGGATATGTTTTAAAATCTCAGATGAAGGCTCTGTTGGAGGAAGAA
GCAGAGAA
back to top