FC876977

Overview
NameFC876977
Unique NameFC876977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 55/193 (28.50%), Postives = 86/193 (44.56%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            R V R +  +I+AQIV  + VGD ++ +A++ E+ + G +    N  AAY TGLLL ++ LK        EGN E                  A+LD+GL   T G  V             IPHS++   G  +             I G HV  Y   L  ++ EKY   F++Y+  G++ + L   ++++
Sbjct:   34 RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQFSKYLKNGLNPEDLPEHFEEI 187          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 63/194 (32.47%), Postives = 86/194 (44.33%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            RFVVR T K II QIV+A   GD  +AAA++ EL  +YG   GL N  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF            +P  ++      +             I G H+A++   L E  PE Y+  F++YI++G D   L   +++V
Sbjct:   34 RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQLPTHFEEV 188          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 54/193 (27.98%), Postives = 80/193 (41.45%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            R VVR TNK +I Q V  +  GD  +AAA++ EL ++G +    N  A Y TG L   R  K         G   A+                   D+GL   T G R+F            +P                D  V+   + G H+A Y   L +++P+KY+  F+ Y+ +G+D   L A +K+V
Sbjct:   34 RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKK--------AGMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDLPAHFKEV 186          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 56/195 (28.72%), Postives = 84/195 (43.08%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            K R VVR TNK IIAQ+V A   GD  +       L ++G      N +AAY  GL+              Y+  +    E              A+LD+GL +   G+RVF            IPH           G+++  E  R  + G HVA Y + L E+ PE Y++ F+ Y+ +G+  + L   +++V
Sbjct:   32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPH-----------GEEVLPEDDR--VSGKHVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPKHFEEV 187          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 54/195 (27.69%), Postives = 83/195 (42.56%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            K R VVR TNK +IAQIV A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF            +PH +             +     + I G HVA Y   L E+ PE Y++ F+ Y+ +G+  + L + +++V
Sbjct:   32 KPRLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEV 187          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 52/195 (26.67%), Postives = 84/195 (43.08%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            K R V R T    IAQIV  +  GD  + +A++ EL + G +    N  +AY TG LL ++ L         +G  E                  A+LD+GL + T GN +F            IPH ++                  + I G H+ AY   L E + E+Y+  F++Y+ KG++ + L   ++++
Sbjct:   32 KPRLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEEILPS-------------EERIRGEHIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKLPEHFEEI 187          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12
Identity = 52/195 (26.67%), Postives = 81/195 (41.54%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            K R VVR TNK IIAQ+V A   GD  +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH ++      +             I G H+A Y   L ++ PE Y++ F+ Y+ +G+  + L   +++V
Sbjct:   32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDR-------------ISGKHIAEYAEKLKKENPELYKTRFSRYLQRGLAPEELPTHFEEV 187          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.134e-11
Identity = 51/197 (25.89%), Postives = 88/197 (44.67%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            K R VVRF+N+ ++AQ++ +   GD  +A A + EL  ++G   G  N  AAY  GLL+  R L K +++                           A+LDVGL + T G R+F            +PH +             + +     + G H+A Y + L +  PE Y+  F++Y+ +G++ + +    ++V
Sbjct:   32 KPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDE-------------EVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARGLEPENISKHIEEV 188          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 58/194 (29.90%), Postives = 85/194 (43.81%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645
            R VVR TNK IIAQI   N  GD ++ AA++ EL  ++G +  L N  AAY TG LL  R LK         G  E                  A+ D+GL     G+R+F            IP  D    G  +D            I G H+A+Y   L  + PE ++  F++Y+ +G+    L + ++++
Sbjct:   34 RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGD---LGIKED-----------RIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDLPSHFEEI 187          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 57/200 (28.50%), Postives = 86/200 (43.00%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGI 609
            RAR +++        T K R VVR T   +IAQI++  + GD  L +A++ +L + G   G +N AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF            +PH +      S+             I G H+  Y  +L E+E  K    F++Y+ +G+
Sbjct:   22 RARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGESVLPDESR-------------IRGEHIMEYAESLDEEELRK---RFSKYLERGL 172          
The following BLAST results are available for this feature:
BLAST of FC876977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL18_META37.103e-1428.5050S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_STAMF1.212e-1332.4750S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_METS51.026e-1227.9850S ribosomal protein L18P OS=Metallosphaera sedul... [more]
RL18_THENV1.340e-1228.7250S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_PYRCJ2.285e-1227.6950S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]
RL18_METJA6.649e-1226.6750S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_PYRIL8.683e-1226.6750S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_CALMQ1.134e-1125.8950S ribosomal protein L18P OS=Caldivirga maquiling... [more]
RL18_SULTO1.481e-1129.9050S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_METTH1.481e-1128.5050S ribosomal protein L18P OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CB08RM1 EHR Citrus clementina cDNA clone KN0AAN3CB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876977 ID=FC876977; Name=FC876977; organism=Citrus clementina; type=EST; length=649bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTTTCGAAGGATGGCAAGCAGCTGGATGCTGAGGTTCA
CCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGA
TGGAGGATGAGCCAGAGAAGTATCAATCTCACTTCACCGAGTACATCACG
AAAGGAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATG
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