FC876977
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14 Identity = 55/193 (28.50%), Postives = 86/193 (44.56%), Query Frame = 1 Query: 67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 R V R + +I+AQIV + VGD ++ +A++ E+ + G + N AAY TGLLL ++ LK EGN E A+LD+GL T G V IPHS++ G + I G HV Y L ++ EKY F++Y+ G++ + L ++++ Sbjct: 34 RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQFSKYLKNGLNPEDLPEHFEEI 187
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 63/194 (32.47%), Postives = 86/194 (44.33%), Query Frame = 1 Query: 67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 RFVVR T K II QIV+A GD +AAA++ EL +YG GL N AAY TGLL A R LK G Y+V D+GL T G +VF +P ++ + I G H+A++ L E PE Y+ F++YI++G D L +++V Sbjct: 34 RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQLPTHFEEV 188
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12 Identity = 54/193 (27.98%), Postives = 80/193 (41.45%), Query Frame = 1 Query: 67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 R VVR TNK +I Q V + GD +AAA++ EL ++G + N A Y TG L R K G A+ D+GL T G R+F +P D V+ + G H+A Y L +++P+KY+ F+ Y+ +G+D L A +K+V Sbjct: 34 RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKK--------AGMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDLPAHFKEV 186
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.340e-12 Identity = 56/195 (28.72%), Postives = 84/195 (43.08%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 K R VVR TNK IIAQ+V A GD + L ++G N +AAY GL+ Y+ + E A+LD+GL + G+RVF IPH G+++ E R + G HVA Y + L E+ PE Y++ F+ Y+ +G+ + L +++V Sbjct: 32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPH-----------GEEVLPEDDR--VSGKHVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPKHFEEV 187
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12 Identity = 54/195 (27.69%), Postives = 83/195 (42.56%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 K R VVR TNK +IAQIV A GD + L ++G + N +AAY GL++ Y+ + E A+LD+GL + T G RVF +PH + + + I G HVA Y L E+ PE Y++ F+ Y+ +G+ + L + +++V Sbjct: 32 KPRLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEV 187
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12 Identity = 52/195 (26.67%), Postives = 84/195 (43.08%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 K R V R T IAQIV + GD + +A++ EL + G + N +AY TG LL ++ L +G E A+LD+GL + T GN +F IPH ++ + I G H+ AY L E + E+Y+ F++Y+ KG++ + L ++++ Sbjct: 32 KPRLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEEILPS-------------EERIRGEHIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKLPEHFEEI 187
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12 Identity = 52/195 (26.67%), Postives = 81/195 (41.54%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 K R VVR TNK IIAQ+V A GD + L ++G + N AAY GL++ Y+ + E A+LD+GL + G+RVF IPH ++ + I G H+A Y L ++ PE Y++ F+ Y+ +G+ + L +++V Sbjct: 32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDR-------------ISGKHIAEYAEKLKKENPELYKTRFSRYLQRGLAPEELPTHFEEV 187
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.134e-11 Identity = 51/197 (25.89%), Postives = 88/197 (44.67%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 K R VVRF+N+ ++AQ++ + GD +A A + EL ++G G N AAY GLL+ R L K +++ A+LDVGL + T G R+F +PH + + + + G H+A Y + L + PE Y+ F++Y+ +G++ + + ++V Sbjct: 32 KPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDE-------------EVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARGLEPENISKHIEEV 188
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11 Identity = 58/194 (29.90%), Postives = 85/194 (43.81%), Query Frame = 1 Query: 67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGLEALYKKV 645 R VVR TNK IIAQI N GD ++ AA++ EL ++G + L N AAY TG LL R LK G E A+ D+GL G+R+F IP D G +D I G H+A+Y L + PE ++ F++Y+ +G+ L + ++++ Sbjct: 34 RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGD---LGIKED-----------RIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDLPSHFEEI 187
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11 Identity = 57/200 (28.50%), Postives = 86/200 (43.00%), Query Frame = 1 Query: 10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGI 609 RAR +++ T K R VVR T +IAQI++ + GD L +A++ +L + G G +N AAAY TG L +R LK EG E A+LD+GL G++VF +PH + S+ I G H+ Y +L E+E K F++Y+ +G+ Sbjct: 22 RARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGESVLPDESR-------------IRGEHIMEYAESLDEEELRK---RFSKYLERGL 172 The following BLAST results are available for this feature:
BLAST of FC876977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876977 ID=FC876977; Name=FC876977; organism=Citrus clementina; type=EST; length=649bpback to top |