FC876977

Overview
NameFC876977
Unique NameFC876977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.526e-11
Identity = 56/188 (29.79%), Postives = 87/188 (46.28%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGL 624
            K R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y+ KG++ + L
Sbjct:   32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.526e-11
Identity = 56/188 (29.79%), Postives = 87/188 (46.28%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGL 624
            K R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y+ KG++ + L
Sbjct:   32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.300e-11
Identity = 47/130 (36.15%), Postives = 64/130 (49.23%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 450
            K R VVR TN+ II QI++A++ GD    AA + EL ++G E  L N  AAY TG+LLA R LK               G++             A+LD+GL + T G RVF            IPH+++
Sbjct:   32 KPRMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK--------------AGQE------------GAILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of FC876977 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 56/188 (29.79%), Postives = 84/188 (44.68%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYITKGIDADGL 624
            K R V R +  ++ AQ++S +  GD VL +A+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D           ++ AE  R  + G HV  Y  +L ED  + Y+  F++Y+ KG++ + L
Sbjct:   32 KPRLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGD-----------EIIAEEER--LNGTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
The following BLAST results are available for this feature:
BLAST of FC876977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL18_METM72.526e-1129.7950S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM62.526e-1129.7950S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METHJ3.300e-1136.1550S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_METM57.351e-1129.7950S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CB08RM1 EHR Citrus clementina cDNA clone KN0AAN3CB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876977 ID=FC876977; Name=FC876977; organism=Citrus clementina; type=EST; length=649bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTTTCGAAGGATGGCAAGCAGCTGGATGCTGAGGTTCA
CCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGA
TGGAGGATGAGCCAGAGAAGTATCAATCTCACTTCACCGAGTACATCACG
AAAGGAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATG
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