FC876994

Overview
NameFC876994
Unique NameFC876994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876994 vs. ExPASy Swiss-Prot
Match: S39A1_MOUSE (Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 64/261 (24.52%), Postives = 115/261 (44.06%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLSDS----NETFKDL-TSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFRTS----SIGDT---------ILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLNGVGVI 794
            L L + FAGGVFL T ++  L D     +E  + L  +  +P    + + G+ L +  + I     +Q S         EE    +GT +G P  +         G T          +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L G  ++
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALEALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSSPPHP-----EETRALLGTVNGGPQHWHDGPGIPQAGGTPAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLR--VQVVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELATSEQRILKVILLLAGFALL 316          
BLAST of FC876994 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 70/298 (23.49%), Postives = 129/298 (43.29%), Query Frame = 3
Query:    9 LVSTFAGGVSPYFYRWNESFL-------LLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSK-----SYPFAFMLASAGYLLTMFGDCIINFVIK---------------QGSKKETRVDVEEEKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLAC--GVFIYVAINHLIAKGFK-PQNKCYFDAPFFKFLAVLNGVGVIAVVMIW 812
            L+++  G  +P F R N SFL        +   FA G+ LGT  MH L DS E    +  +      +PF+  LA    L+T+  D +   +                  G   +  + ++E+ S       N    R   I   ++L L +  HSV  G+++G ++        +  +  H++F  + +G  +L+   +   +     +F FA+++P G+ +GIA+    Q +    +  + +  AC  G+ IY+A+  L+A  F  P+ +      F   +A L G G ++++  W
Sbjct:   52 LIASMIGVGAPLFSR-NVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEENPWHKFPFSGFLAMLSGLITLAIDSMATSLYTSKNAVGIMPHGHGHGHGPANDVTLPIKEDDS------SNAQLLRYRVI--AMVLELGIIVHSVVIGLSLGATSDTCTIKGLIAALCFHQMFEGMGLGGCILQ--AEYTNMKKFVMAFFFAVTTPFGIALGIALSTVYQDNSPKALITVGLLNACSAGLLIYMALVDLLAAEFMGPKLQGSIKMQFKCLIAALLGCGGMSIIAKW 338          
BLAST of FC876994 vs. ExPASy Swiss-Prot
Match: S39A3_HUMAN (Zinc transporter ZIP3 OS=Homo sapiens GN=SLC39A3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 64/252 (25.40%), Postives = 113/252 (44.84%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTS-----KSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEE-EKSEEVGTD------------GNPVFFRTSSIGDTIL--------------LILALCFHSVFEGIAIGVSATKGEAWRNLWT-ISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAK 713
            ++  L L   F GGVFL T     L    E  + + S       YP A  +   G+ +T+F + +I    K+   K + +D+E      +VG+D            G+ ++      G ++               L  AL  HSVFEG+A+G+   +GE   +L+  +++H+   A+A+GI++ R     P    A  +   +   P+G+G+G+ I+ + QG        +  GLA G F+++    ++AK
Sbjct:   40 SKKILSLCNTFGGGVFLATCFNALLPAVREKLQKVLSLGHISTDYPLAETILLLGFFMTVFLEQLILTFRKE---KPSFIDLETFNAGSDVGSDSEYESPFMGGARGHALYVEPHGHGPSLSVQGLSRASPVRLLSLAFALSAHSVFEGLALGLQ-EEGEKVVSLFVGVAVHETLVAVALGISMAR--SAMPLRDAAKLAVTVSAMIPLGIGLGLGIE-SAQGVPGSVASVLLQGLAGGTFLFITFLEILAK 284          
BLAST of FC876994 vs. ExPASy Swiss-Prot
Match: S39A3_BOVIN (Zinc transporter ZIP3 OS=Bos taurus GN=SLC39A3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 65/251 (25.90%), Postives = 111/251 (44.22%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT-----SKSYPFAFMLASAGYLLTMFGDCIINFVIKQ----------GSKKETRVDVEEEKSEEVGTDGNPVF--------------FRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWT-ISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISS--PIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAK 713
            ++  L L   F GGVFL T     L    E  K++      S  YP A  +   G+ +T+F + ++    K+           +  +   D E E     G  G+ ++                 SS    + L+ AL  HSVFEG+A+G+   +GE   +L+  +++H+   A+A+GI + R        L  A   A  +S+  P+G+ +G+ I+ + QG  +     +  GLA G F++V    ++AK
Sbjct:   40 SKKILSLCNTFGGGVFLATCFNALLPAVREKLKEVLTLAHISTDYPLAETIMLLGFFMTVFLEQLVLTFRKERPAFIDLETFNASSDAGSDSEYESPFMGGPRGHALYAEPHGHSHGLSVQELSRSSPLRLLSLVFALSAHSVFEGLALGLQ-EEGEKVVSLFVGVAIHETLVAVALGINMAR----SAMALRDAAKLAVTVSAMIPLGISLGLGIE-SAQGMPSSVASVLLQGLAGGTFLFVTFFEILAK 284          
BLAST of FC876994 vs. ExPASy Swiss-Prot
Match: ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 70/275 (25.45%), Postives = 119/275 (43.27%), Query Frame = 3
Query:   90 AGGVFLGTSMMHFLSDSNETFKDLTSK--------SYPFA-FMLASAGYLLTMFGDCIINFVIKQGSKKE--------------TRVDVEE--------EKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLAC--GVFIYVAINHLIA-KGFKPQNKCYFDAPFFKFLAVLNGVGVIAVVMIW 812
            A GV L T  MH L DS   F DLTSK         +PFA F+   +  L+ M     +    ++ SK+E              T+ D++         EK E+V  D      R   I    +L L +  HSV  G+A+G S  K      +  +  H++F  + +G ++L+   K     T    F F++++P G+ +G+AI           +  + +  AC  G+ IY+A+ +L+A + F P+ +         ++A   G   ++++  W
Sbjct:   97 ASGVILATGFMHVLPDS---FDDLTSKCLPEDPWQKFPFATFITMISALLVLMIESFAMCAYARRTSKREGEVVPLENGSNSVDTQNDIQTLENGSSYVEKQEKVNEDKTSELLRNKVIAQ--ILELGIVVHSVVIGLAMGASDNKCTVQSLIAALCFHQLFEGMGLGGSILQAQFKSKTNWTMV--FFFSVTTPFGIVLGMAIQKIYDETSPTALIVVGVLNACSAGLLIYMALVNLLAHEFFGPKIQGNIKLHVLGYVATFTGAAGMSLMAKW 364          
The following BLAST results are available for this feature:
BLAST of FC876994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
S39A1_MOUSE1.712e-1124.52Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 P... [more]
IRT1_ARATH1.712e-1123.49Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
S39A3_HUMAN3.814e-1125.40Zinc transporter ZIP3 OS=Homo sapiens GN=SLC39A3 P... [more]
S39A3_BOVIN3.814e-1125.90Zinc transporter ZIP3 OS=Bos taurus GN=SLC39A3 PE=... [more]
ZIP7_ARATH8.497e-1125.45Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CC07RM1 EHR Citrus clementina cDNA clone KN0AAN3CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876994 ID=FC876994; Name=FC876994; organism=Citrus clementina; type=EST; length=824bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCGATGATGCATTTCTTGAGTGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTAT
AAAGCAGGGTAGCAAAAAAGAAACTAGAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCAGTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGCA
ATTTCAATGGGACTTGCTTGTGGGGTTTTCATATATGTTGCCATCAACCA
TCTCATTGCCAAAGGGTTTAAGCCACAAAATAAATGTTACTTTGACGCTC
CTTTCTTTAAATTTCTTGCTGTGCTTAATGGAGTTGGAGTCATTGCAGTT
GTTATGATTTGGGATTAATCTCCT
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