FC876996

Overview
NameFC876996
Unique NameFC876996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_RICAH (GTP-binding protein era homolog OS=Rickettsia akari (strain Hartford) GN=era PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 42/117 (35.90%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   12 QYLMEQAVQRPW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 356
            +Y+  +A   PW  +ED +T  +  M+ I+ E+ RE+L  ++ QE+PY +  +   W+DL+D S++I Q +I ++ S + I++GKNGSKI  IG ++  ++   F   VHL L V++
Sbjct:  163 EYITGKAQIAPWLYAEDDIT--DLPMRFIAAEITREQLFFNLQQELPYKLTVQTEKWEDLKDKSVKINQVIIVSRASYKTIILGKNGSKIREIGSKSRMQMERFFGFPVHLFLFVKV 277          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_BRUME (GTP-binding protein era homolog OS=Brucella melitensis GN=era PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 38/116 (32.76%), Postives = 67/116 (57.76%), Query Frame = 3
Query:   12 QYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            +YL E     PW      +S+  M+ ++ E+ RE+L   +H+E+PY+       W++ +DGS+RIEQ +   + SQ+KI++G  G  +  IG  A +E+  I ++ VH  L V+++
Sbjct:  177 KYLAESVPNGPWYYPEDQISDMPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIVLGHKGETVKAIGQAARKEISEILEQTVHQFLFVKVR 292          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_RICCN (GTP-binding protein era homolog OS=Rickettsia conorii GN=era PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 40/118 (33.90%), Postives = 74/118 (62.71%), Query Frame = 3
Query:   12 QYLMEQAVQRPW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            +Y+  +A   PW  +ED +T  +  M+ I+ E+ RE+L  ++ +E+PY +  +   W+DL+D S++I Q ++ ++ S + I++GKNGSKI  IG ++  ++   F   VHL L V+++
Sbjct:  209 EYITSKAKISPWLYAEDDIT--DLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVR 324          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERAL_MOUSE (GTP-binding protein era homolog OS=Mus musculus GN=Eral1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = 3
Query:    3 TRTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 356
            T  QYL+ QA   PW      ++ +  + I    +RE+LL+++ +E+PY ++ + + W++   G L I+Q+L+  K S  +IL+G+ G  I +I  E   +L  IF  DV + L V+L
Sbjct:  318 TLKQYLLTQAQPGPWEFHSGVLTSQTPEEICANKIREKLLEYLPEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGLLISQIAQEVGRDLMDIFHCDVLIRLSVKL 435          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_RICCK (GTP-binding protein era homolog OS=Rickettsia canadensis (strain McKiel) GN=era PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 39/118 (33.05%), Postives = 73/118 (61.86%), Query Frame = 3
Query:   12 QYLMEQAVQRPW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            +Y+  +A   PW  +ED +T  +  M+ I+ E+ RE+L  ++ QE+PY +  +   W++L+D S++I Q ++  + S + I++GKNGSKI  IG ++  ++   F   +HL L V+++
Sbjct:  165 EYITSKAKIAPWLYAEDDIT--DLPMRFIAAEITREQLFLNLQQELPYKLTVQTEKWEELKDKSVKINQVIVVARESYKTIILGKNGSKIKEIGAKSRMQMEQFFSCPIHLFLFVKVR 280          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_RICB8 (GTP-binding protein era homolog OS=Rickettsia bellii (strain OSU 85-389) GN=era PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 36/116 (31.03%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   12 QYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            +Y+  +A   PW  +   +++  M+ I+ E+ RE+L   + QE+PY +  +   W++L+D S++I Q ++ ++ S + I++GKNGSKI  +G ++  +++  F   VHL L V+++
Sbjct:  165 EYITSKAKIAPWLYEEDDITDLPMRFIAAEITREQLFLGLQQELPYKLTVQTEKWEELKDKSVKINQIIVVSRESYKTIILGKNGSKIKELGAKSRMQMQQFFGFPVHLFLFVKVR 280          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_RHILO (GTP-binding protein era homolog OS=Rhizobium loti GN=era PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 40/115 (34.78%), Postives = 65/115 (56.52%), Query Frame = 3
Query:   15 YLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            YL +     PW      +S+  M+ ++ E+ RE+L   +HQE+PYS       W++  DGS+RI+Q +   + SQ+KI++G  G  I  IG  A  E+  I ++ VHL L V+++
Sbjct:  177 YLAQALPAGPWYYPEDQISDLPMRQLAAEITREKLYLRLHQELPYSSHIETEKWEEKPDGSVRIDQTIYVERDSQKKIVLGHKGETIRAIGQAARMEIAGILEQKVHLFLFVKVR 291          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_RICBR (GTP-binding protein era homolog OS=Rickettsia bellii (strain RML369-C) GN=era PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 36/116 (31.03%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   12 QYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            +Y+  +A   PW  +   +++  M+ I+ E+ RE+L   + QE+PY +  +   W++L+D S++I Q ++ ++ S + I++GKNGSKI  +G ++  +++  F   VHL L V+++
Sbjct:  165 EYITSKAKIAPWLYEEDDITDLPMRFIAAEITREQLFLGLQQELPYKLTVQTEKWEELKDKSVKINQIIVVSRESYKTIILGKNGSKIKELGAKSRMQMQQFFGFPVHLFLFVKVQ 280          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_BRAJA (GTP-binding protein era homolog OS=Bradyrhizobium japonicum GN=era PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   66 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            MS+  M++++ E+ RE++   +HQE+PY        W++ +D S+RIEQ +   + SQRKI++GK G+ I  IG ++ +E+  I    VHL L V+++
Sbjct:  191 MSDAPMRHLAAEITREKIYRKLHQELPYQSTVETDKWEERKDKSVRIEQTIFVERESQRKIVLGKGGATIKSIGADSRKEISEILGVPVHLFLFVKVR 288          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_RICFE (GTP-binding protein era homolog OS=Rickettsia felis GN=era PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 40/118 (33.90%), Postives = 73/118 (61.86%), Query Frame = 3
Query:   12 QYLMEQAVQRPW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            +Y+  +A   PW  +ED +T  +  M+ I+ E+ RE+L  ++ QE+PY +  +   W+ L+D S++I Q ++ ++ S + I++GKNGSKI  IG ++  ++   F   VHL L V+++
Sbjct:  163 EYITGKAKISPWLYAEDDIT--DLPMRFIAAEITREQLFFNLQQELPYKLTVQTEKWEVLKDKSIKINQVIVVSRESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVR 278          
The following BLAST results are available for this feature:
BLAST of FC876996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ERA_RICAH3.292e-1435.90GTP-binding protein era homolog OS=Rickettsia akar... [more]
ERA_BRUME3.292e-1432.76GTP-binding protein era homolog OS=Brucella melite... [more]
ERA_RICCN5.615e-1433.90GTP-binding protein era homolog OS=Rickettsia cono... [more]
ERAL_MOUSE5.615e-1433.05GTP-binding protein era homolog OS=Mus musculus GN... [more]
ERA_RICCK7.333e-1433.05GTP-binding protein era homolog OS=Rickettsia cana... [more]
ERA_RICB87.333e-1431.03GTP-binding protein era homolog OS=Rickettsia bell... [more]
ERA_RHILO7.333e-1434.78GTP-binding protein era homolog OS=Rhizobium loti ... [more]
ERA_RICBR9.578e-1431.03GTP-binding protein era homolog OS=Rickettsia bell... [more]
ERA_BRAJA1.251e-1336.73GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_RICFE2.134e-1333.90GTP-binding protein era homolog OS=Rickettsia feli... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CC09RM1 EHR Citrus clementina cDNA clone KN0AAN3CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876996 ID=FC876996; Name=FC876996; organism=Citrus clementina; type=EST; length=774bp
GCACGAGGACTCAATATTTGATGGAGCAGGCAGTTCAAAGACCTTGGTCT
GAAGATCCATTAACCATGAGTGAAGAAGTTATGAAGAACATTTCATTGGA
AGTCGTCCGGGAGAGGTTACTGGACCATGTACATCAGGAAATTCCTTACA
GTATTGAACATCGGTTGATAGACTGGAAGGATTTACGAGATGGCTCCCTT
AGGATTGAACAACACTTGATTACCAACAAGCTAAGCCAGCGAAAAATTCT
CGTGGGGAAGAATGGCTCTAAAATAGGGAGAATAGGTGTTGAAGCTAATG
AAGAGCTAAGGTCCATCTTTAAAAGGGATGTGCATCTAATCCTCCAGGTT
AGACTAAAGACTTAAGTGATGGGCTCAACAAATGAATCAATTTTTGAGAA
GTGCTTCATCTCGCACTGTACCATCTGATTGTGTATATATGAAGAAGGCC
TATCAGGTGCACTTCTACGGTAAACATCTGGTTTCTTTCCCTTGCAAAGG
TTTTTTAGAGTTGAGCTTTAATTCAGGAGTTTAAATTGGACACCTAGGCG
TTGTAACACAAATGCCCCAAGAGCCCCTTATTTTAGGGGGGGAAAAAATC
TGCATTATCTTTTCTTGTATTATGTTTATCTTGCAGCATCTCGTTAAGAT
TAATTTGCCTAGCTTTTTTAATCTGAATTCATTCTGGTATTTATAAATTT
TGTACTTATGTACCATTGTACAATGACTACATTATGTTATTCATTGAAAA
ATTACTTTCATTGGGTTATCAAAA
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