FC876997
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11 Identity = 59/199 (29.65%), Postives = 93/199 (46.73%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL----EALYQKV 645 K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH D+ A D ++L+ G HV Y +L ED + Y+ F++Y++KG++ + L E L +K+ Sbjct: 32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11 Identity = 59/199 (29.65%), Postives = 93/199 (46.73%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL----EALYQKV 645 K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH D+ A D ++L+ G HV Y +L ED + Y+ F++Y++KG++ + L E L +K+ Sbjct: 32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11 Identity = 60/190 (31.58%), Postives = 82/190 (43.16%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEA 630 K R VVR TN+ +IAQIV GD V+ + L +G + L N AAY TG+L+A++ L+ + GE A+LD+GL T G+RVF +PHSD+ S+ I G H+AAY E PE+ F EY K+G+ L A Sbjct: 34 KPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSR-------------IRGEHIAAY----YEMNPER----FGEYEKRGLKPSDLPA 176
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11 Identity = 47/130 (36.15%), Postives = 64/130 (49.23%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 450 K R VVR TN+ II QI++A++ GD AA + EL ++G E L N AAY TG+LLA R LK G++ A+LD+GL + T G RVF IPH+++ Sbjct: 32 KPRMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK--------------AGQE------------GAILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11 Identity = 56/188 (29.79%), Postives = 85/188 (45.21%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 624 K R V R + ++ AQ++S + GD VL +A+ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH D ++ AE R + G HV Y +L ED + Y+ F++Y++KG++ + L Sbjct: 32 KPRLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGD-----------EIIAEEER--LNGTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11 Identity = 56/200 (28.00%), Postives = 84/200 (42.00%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYQKVHAAI 657 K RFVVR +NK + Q++ GD V+AAA++ EL + YG + + A Y TG+L A R K G Y+V D+GL K T G RVF +P D I G H+A+Y +L + PE+YQ F + +++G+ + +++V A I Sbjct: 32 KPRFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD--------------VVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKI 191
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11 Identity = 63/234 (26.92%), Postives = 100/234 (42.74%), Query Frame = 1 Query: 1 ARG-RARIRLINQDKNKYN---------TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL----EALYQKVHAAIR 660 ARG R R+ L + + K N + K R VVR ++ I QI A GD V+A+A+++EL +YG + N A Y G L A++ LK +G E A++D+GL + +RVF IP D +D + + G H+A Y L E PE ++ F+ Y+ G+D + L +++ QK+ A++ Sbjct: 2 ARGARYRVPLKRRREGKTNYYKRRKLIISGKPRLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD---GVLPEDDR----------VRGEHIANYAKMLKESNPELFKLRFSGYLSAGLDPESLPEHFDSVKQKIEEALQ 196
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11 Identity = 54/199 (27.14%), Postives = 84/199 (42.21%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYQKVHAAI 657 K R VVR N +I+AQ+V + GD V+ +++ L +YG + N +AY GL+ LK R A+LD+G K+T GN ++ IPHS+ + I G H+A Y L E+E E Y+ F+ Y+K+G+D + L +++V I Sbjct: 32 KPRLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------------------------RGYKEAVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQFSRYLKEGLDPEQLPNHFEEVKQKI 190
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11 Identity = 56/199 (28.14%), Postives = 92/199 (46.23%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYQKVHAAI 657 K R V R + +IIAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ ++ EG E A+LD GL + T G +F IP G+++ A+ R + G H+ Y L EDE E Y+ F++Y++KG++ + L ++++ I Sbjct: 32 KPRLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 190
BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11 Identity = 56/199 (28.14%), Postives = 92/199 (46.23%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYQKVHAAI 657 K R V R + +IIAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ ++ EG E A+LD GL + T G +F IP G+++ A+ R + G H+ Y L EDE E Y+ F++Y++KG++ + L ++++ I Sbjct: 34 KPRLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIP-----------CGEEIIADEER--LNGTHIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 192 The following BLAST results are available for this feature:
BLAST of FC876997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876997 ID=FC876997; Name=FC876997; organism=Citrus clementina; type=EST; length=663bpback to top |