FC876997

Overview
NameFC876997
Unique NameFC876997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC876997 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 58/199 (29.15%), Postives = 90/199 (45.23%), Query Frame = 1 
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL----EALYQKV 645
            K R V R +  ++ AQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL  + +K                ED             A+LD GL + T G  +F            IPH DK  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L    E L +K+
Sbjct:   32 KPRLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190
The following BLAST results are available for this feature:
BLAST of FC876997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RL18_METMP9.928e-1129.1550S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CC10RM1 EHR Citrus clementina cDNA clone KN0AAN3CC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876997 ID=FC876997; Name=FC876997; organism=Citrus clementina; type=EST; length=663bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTTTCGAAGGATGGCAAGCAGCTGGATGCTGAGGTTCA
CCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGA
TGGAGGATGAGCCAGAGAAGTATCAATCTCACTTCACCGAGTACATCAAG
AAAGGAATTGATGCTGATGGCTTGGAGGCACTGTACCAGAAGGTTCATGC
TGCCATTCGTGCA
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