FC877010

Overview
NameFC877010
Unique NameFC877010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10414 contig Ccv1_Contig10414:6..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877010 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 58/260 (22.31%), Postives = 107/260 (41.15%), Query Frame = 2
Query:   20 GEKDVTFKVTHCGICHSDLHLIK-NEWGNAIYPI--VPGHDIVGVLTEVGSKVSKFKVGDKV-GVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFSKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--DMQAAMGTMDGI---IDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL 772
            G  DV  K+    IC +D+H+   ++W     P+  V GH+ VG + + G+ V+++KVG +V G G +V  C  C +C     + C   +         G    G + + +   +H VV IP+  P +  A     G  V++ L F   D  G                  ++ +G +  VI+     +    ++LG    + +  +   D+   +G  +G    ++   A      +I  + + GK+ +LG      E+
Sbjct:   28 GPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFGAAVTEYKVGQRVSGEGHIV--CGHCRNCRAGRGHLCRNTLGV-------GVNRPGAFGEYLAIPQHNVVPIPDDVPDEIAAIFDPLGNAVHTALSF---DLVGEDVLVTGAGPIGIMGALVAQCVGARKVVITDINPVRLALAKKLGVQHVVDASKEKLRDVMPVLGMTEGFDVGLEMSGAAPAFRDMIDTMNNGGKIAILGIAPTGFEI 275          
BLAST of FC877010 vs. ExPASy Swiss-Prot
Match: TDH_PECCP (L-threonine 3-dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 61/287 (21.25%), Postives = 117/287 (40.77%), Query Frame = 2
Query:   20 GEKDVTFKVTHCGICHSDLHLIK-NEWGNAIYPI--VPGHDIVGVLTEVGSKVSKFKVGDKV-GVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFSKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ--DDMQAAMGTMDGI---IDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGVEGDSRYD 853
            G  D+  K+    IC +D+H+   +EW     P+  V GH+ VG +  +G +V+ F +GD+V G G +  +C  C +C     + C   I         G    G +++ +V   +   RIP+    +  A     G  V++ L F   D  G                   + +G +  VI+   + + +   ++GA   +   ++   D+   +G  +G    ++   A      ++  +   G++ +LG P +P+ +       G  I  G  I G+ G   ++
Sbjct:   24 GHNDIMIKIRKSAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEIVAIGQEVNGFHIGDRVSGEGHI--TCGYCRNCRAGRRHLCRNAIGV-------GVNRPGSFAEYLVIPAYNAFRIPDNISDELAAIFDPFGNAVHTALSF---DLVGEDVLIAGAGPIGMMAAAVCRHVGARNVVITDVNAYRLDLARKMGATRAVNVAEERLADVMIELGMTEGFDIGLEMSGAPSAFRAMLKAMNHGGRIAMLGIPHEPMSID-----WGEVIFKGLFIKGIYGREMFE 293          
BLAST of FC877010 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 61/260 (23.46%), Postives = 107/260 (41.15%), Query Frame = 2
Query:   20 GEKDVTFKVTHCGICHSDLHLIK-NEWGNAIYPI--VPGHDIVGVLTEVGSKVSKFKVGDKV-GVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFSKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--DMQAAMGTMDGI---IDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL 772
            G  DV  +V    IC +D+H+   ++W     P+  V GH+  G + E+GS V+K+ VG++V G G +V  C  C +C     + C   +         G    G + + +   E  VV IP+  P +  A     G  V++ L F   D  G                  +K  G +  VI+     +     +LG D  + +  ++  D+  ++G  +G    ++   A      +I  + + GK+ +LG      E+
Sbjct:   28 GPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFCGEIAEIGSAVTKYHVGERVSGEGHIV--CGKCRNCRAGRGHLCRNTLGV-------GVNRPGSFGEFVCIPESNVVPIPDDIPDEVAAIFDPFGNAVHTALSF---DLVGEDVLVTGAGPIGIMGAMVAKRSGARKVVITDINPNRLALAHKLGIDHVVDASKENLADVMKSIGMTEGFDVGLEMSGAAPAFRDMIDKMNNGGKIAILGIAPAGFEI 275          
The following BLAST results are available for this feature:
BLAST of FC877010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
TDH_RHILO8.994e-1122.31L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]
TDH_PECCP8.994e-1121.25L-threonine 3-dehydrogenase OS=Pectobacterium caro... [more]
TDH_AGRRK8.994e-1123.46L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CD08RM1 EHR Citrus clementina cDNA clone KN0AAN3CD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877010 ID=FC877010; Name=FC877010; organism=Citrus clementina; type=EST; length=858bp
GCACGAGGGAAGAGCAACGGGAGAGAAGGATGTGACATTCAAAGTAACTC
ACTGTGGGATATGCCATTCAGATCTTCACTTGATCAAAAATGAATGGGGC
AATGCCATTTACCCAATCGTCCCCGGACATGATATTGTGGGCGTACTGAC
AGAGGTCGGAAGCAAAGTGAGTAAATTCAAAGTCGGAGACAAAGTGGGAG
TAGGATGCATGGTGGGATCATGCCGCTCTTGTGATAGCTGCGCCATTGAT
CTTGAGAACTACTGCCCCAAAGTTATAATGACCTATGCCAGCAAGTACCA
TGATGGAACCATCACATACGGAGGCTACTCTGACACTATGGTTGCCGATG
AGCACTTTGTGGTCCGTATTCCTGAAGGCGCACCACTTGACGCCACTGCC
CCTCTCCTCTGTGCTGGTATCACAGTCTACAGTCCGTTGAGATTCTATGG
ACTCGACAAGCCTGGTATGCATGTGGGTGTTGTCGGCTTGGGCGGTCTAG
GCCATGTCGCTGTCAAATTCTCAAAGGCTATGGGGGTTAAGGTGACTGTG
ATCAGTACCTCCCCTAGCAAGAAGAGTGAAGCCGTTGAACGTCTTGGCGC
TGATTCCTTTTTGGTCAGTCGTGATCAAGATGACATGCAAGCTGCCATGG
GCACAATGGATGGTATCATCGATACAGTATCTGCAGTTCACCCGCTAATG
CCGTTGATTGGACTGTTGAAATCTCAAGGAAAGCTTGTACTTCTTGGTGC
ACCCGAGAAGCCACTAGAGCTACCAGCTTTCCCCCTGCTCACGGGGAGGA
AGATAGTTGGTGGCAGTCTCATTGGGGGGGTAGAAGGAGACTCAAGATAT
GATTGATT
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