FC877013

Overview
NameFC877013
Unique NameFC877013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877013_ssr59 microsatellite FC877013_ssr59:59..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10441 contig Ccv1_Contig10441:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.083e-74
Identity = 146/204 (71.57%), Postives = 170/204 (83.33%), Query Frame = 1
Query:  214 SSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGG-ETLTVAQVAAIATS--STNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            S+ D LNWG   E+LKGSHLEEVK MVAEYR+ V+++GG ETLTV++VAA+A       V+LSESAREGV +S  W++++++KG   YGVTTGFGA S+R+T+ G ALQKE++RFLN  IFG  TE SHTLP SATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHN+TP LPLRGTITASGDL+PLSYIA LL GR NSKA
Sbjct:   17 SNTDPLNWGNAVESLKGSHLEEVKGMVAEYREAVIHVGGGETLTVSKVAAVANQYLQAKVDLSESAREGVDSSCKWIVDNIDKGIPIYGVTTGFGANSNRQTQEGLALQKEMVRFLNCAIFGYQTELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIAALLIGRRNSKA 220          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.463e-71
Identity = 138/202 (68.32%), Postives = 160/202 (79.21%), Query Frame = 1
Query:  223 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA----TSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            D LNWG  A  + GSHL+EVKRMVA++R+P+V + G TL V QVAA+A     +   VEL E AR  VKASS+W++  +  G D YGVTTGFG TSHRRTK+G ALQ EL+R LNAGIFG G++  HTLP    RAAMLVR+NTLLQGYSGIRFEILEAITKLLN  +TPCLPLRGTITASGDLVPLSYIAGL+TGRPN++A
Sbjct:   11 DPLNWGAAAAEMAGSHLDEVKRMVAQFREPLVKIQGATLRVGQVAAVAQAKDAAGVAVELDEEARPRVKASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGPALQVELLRHLNAGIFGTGSDG-HTLPSETVRAAMLVRINTLLQGYSGIRFEILEAITKLLNTGVTPCLPLRGTITASGDLVPLSYIAGLITGRPNAQA 211          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.381e-60
Identity = 127/213 (59.62%), Postives = 156/213 (73.24%), Query Frame = 1
Query:  184 GLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEY-RKPVVNLGGETLTVAQVAAIAT-SSTNVEL-SESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            GLC   ++  S  D LNW   A+ ++GSH EEVK MV  Y     +++ G++LT++ VAA+A  S   V+L + +A+  V+ SS+WV+  M KGTD+YGVTTGFGATSHRRT  G  LQKELIRFLNAG+ G   E+   L    TRAAMLVR NTLLQGYSG+R++ILE + KLLN  +TP LPLRGTITASGDLVPLSYIAGLLTGRPNS+
Sbjct:   19 GLC--TDFGSSGSDPLNWVRAAKAMEGSHFEEVKAMVDSYFGAKEISIEGKSLTISDVAAVARRSQVKVKLDAAAAKSRVEESSNWVLTQMTKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNAGVLGKCPEN--VLSEDTTRAAMLVRTNTLLQGYSGVRWDILETVEKLLNAWLTPKLPLRGTITASGDLVPLSYIAGLLTGRPNSR 227          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.423e-58
Identity = 113/126 (89.68%), Postives = 117/126 (92.86%), Query Frame = 1
Query:  436 MESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            MESM+KGTDSYGVTTGFGATSHRRTK GGAL KELIRFLNAGIFG   ES HTL  SATRAAMLVR+NTLLQGYSGIRFEILEAIT LLNH+ITPCLPLRGTITASGDLVPLSYIAG+LTGRPNSK
Sbjct:    1 MESMDKGTDSYGVTTGFGATSHRRTKQGGALHKELIRFLNAGIFGTNGESGHTLAPSATRAAMLVRINTLLQGYSGIRFEILEAITSLLNHSITPCLPLRGTITASGDLVPLSYIAGMLTGRPNSK 126          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.996e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 1
Query:  583 SSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            S+HTLPHSA+RAAMLVR+NTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA
Sbjct:    1 STHTLPHSASRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 78          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.933e-31
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 1
Query:  238 GVMAETLKGSHLEEVKRMVAEY-RKPVVNLGGETLTVAQVAAIATSSTNVELSESA--REGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIF---------GNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            G +  T + + L+ V+R++A+      + L G TLT+  V   A    +V++++S   RE + AS +++   ++     YGVTTGFG ++  RT++  +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+T  LNH ITP +PLRGTI+ASGDL PLSYIA  +TG P+SK
Sbjct:   39 GSLLPTTETTQLDIVERILADAGATDQIKLDGYTLTLGDVVGAARRGRSVKVADSPHIREKIDASVEFLRTQLDNSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPTSMDGFALGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRIVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAASITGHPDSK 238          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.264e-29
Identity = 81/219 (36.99%), Postives = 120/219 (54.79%), Query Frame = 1
Query:  214 SSGDALNWGVMAETLKGSHL--------EEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSES--AREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIF---------GNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            S+  A+N       + GSHL        + V++M+A      + L G +L +  V + A     V + +S   R  +  S +++   ++     YGVTTGFG ++  RT++  +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+T  LNH ITP +PLRGTI+ASGDL PLSYIA  ++G P+SK
Sbjct:   18 SAKQAVNGASTNLAVAGSHLPTTQVTQVDIVEKMLAAPTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEIRSKIDKSVEFLRSQLSMSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSK 232          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.602e-28
Identity = 74/203 (36.45%), Postives = 119/203 (58.62%), Query Frame = 1
Query:  244 MAETLKGSHLEEVKRMVAEYRKP-VVNLGGETLTVAQVAAIATSSTNVELSES--AREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTE----------SSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            M +T   S   E  R +  Y+    + + G+TL++A VAA A  +  VEL ES   +E V+ S   +   ++ G   YG++TGFG ++  RT     L   L++  + GI    TE          ++ ++P +  R A+L+R+N+L++G+SGIR+E++E + +LL  N+ P +PLRG+I++SGDL PLSYIAG + G P+ K
Sbjct:   43 MTKTSALSQFLEAYRELEGYKNGRAIKVDGQTLSIAAVAAAARYNAAVELDESPLVKERVRKSQLAIANKVSTGASVYGLSTGFGGSADTRTDKPMLLGFALLQHQHVGILPTSTEPLDVLPLQDANNTSMPEAWIRGAILIRMNSLIRGHSGIRWELIEKMRELLAANVIPVVPLRGSISSSGDLSPLSYIAGTIIGNPSIK 245          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_USTMA (Phenylalanine ammonia-lyase OS=Ustilago maydis GN=PAL1 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.256e-22
Identity = 67/194 (34.54%), Postives = 108/194 (55.67%), Query Frame = 1
Query:  286 RMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESA--REGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGI------FGNG-------------TESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKL-LNHNITPCLPLRGTITASGDLVPLSYIAGLLTGR 801
            R  + +R   V + G  L +  + A A       L  SA  R+ +  S   ++  +++G   YG+ TGFG ++  RT N  ALQ  L++    G+      F  G             TESS  +P +  R A++VR+++L++G+SG+R+E+L+ + KL L +N+TP +P+R +I+ASGDL PLSY+AG L G+
Sbjct:   29 RKASSFRTEQVVIDGYNLKIQGLVASARYGHVPVLDPSAETRKRIDDSVQSLIAKLDRGESIYGINTGFGGSADSRTANTRALQLALLQMQQCGVLPVPSTFPTGEPSSAPFALPLTDTESSLIMPEAWVRGAIVVRLSSLMRGHSGVRWEVLDKMQKLFLQNNVTPVVPVRSSISASGDLSPLSYVAGALAGQ 222          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_STRP6 (Histidine ammonia-lyase OS=Streptococcus pyogenes serotype M6 GN=hutH PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.142e-22
Identity = 64/158 (40.51%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  313 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYI 780
            V+NL GE+LT+  V AIA       + +SA E V AS   V + +++    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP  A RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++
Sbjct:    4 VINLDGESLTIEDVIAIARQGVACRIDDSAIEAVNASRKIVDDIVSEKRVVYGVTTGFGSLCNVSISPEDTVQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTIEKLLELLNKGVHPYIPEKGSLGASGDLAPLAHM 154          
The following BLAST results are available for this feature:
BLAST of FC877013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PAL3_PHAVU1.083e-7471.57Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ1.463e-7168.32Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA3.381e-6059.62Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PALY_PERAE2.423e-5889.68Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL4_POPKI1.996e-3696.15Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PALY_RHORB1.933e-3140.20Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_RHOTO5.264e-2936.99Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_AMAMU7.602e-2836.45Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]
PALY_USTMA1.256e-2234.54Phenylalanine ammonia-lyase OS=Ustilago maydis GN=... [more]
HUTH_STRP62.142e-2240.51Histidine ammonia-lyase OS=Streptococcus pyogenes ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CD12RM1 EHR Citrus clementina cDNA clone KN0AAN3CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877013 ID=FC877013; Name=FC877013; organism=Citrus clementina; type=EST; length=820bp
GCACGAGGTAGACTTCAGAATTTCCTTTAGCTCATTCATTCTTCATCACT
CCCATTCATTCTTCTTCTTCTTCTTCTTCTTTCTACAGTTTTGGTATTTT
TTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGATAGGTGCCACT
ACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCAAGAATAA
CAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTGATGGCGG
AGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGTGGCGGAG
TACAGGAAGCCGGTGGTCAACCTCGGTGGTGAGACGTTGACCGTAGCACA
GGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGTCGGAATCTG
CCAGGGAAGGCGTCAAGGCCAGCAGTGATTGGGTGATGGAGAGCATGAAT
AAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGTGCCACTTCTCA
TCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATTAGATTTT
TGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCT
CACTCAGCAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCA
GGGCTACTCCGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGC
TCAATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCT
TCAGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCG
GCCCAATTCTAAGGCCACCG
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