FC877013

Overview
NameFC877013
Unique NameFC877013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877013_ssr59 microsatellite FC877013_ssr59:59..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10441 contig Ccv1_Contig10441:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_CITK8 (Histidine ammonia-lyase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hutH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.100e-18
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L+ AQ+ A+      + L  SA +G+ AS D V   + +G  +YG+ TGFG  +  R  T++   LQ+ L+    AGI          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++
Sbjct:   11 LSFAQLRAVWQQPVQLRLDSSAVDGINASVDCVNNIVAEGRTAYGINTGFGLLAQTRIATEDLQNLQRSLVLSHAAGI-------GEPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAEVWPLIPAKGSVGASGDLAPLAHMSLTLLGEGKAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_BACSK (Histidine ammonia-lyase OS=Bacillus clausii (strain KSM-K16) GN=hutH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.437e-18
Identity = 57/164 (34.76%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  313 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            +V L G +LT+  + AI      V LS+S    ++AS   V + +  G   YG+ TGFG  S  +        LQ+ LI     G+ G  ++         ++A M++R N L +G+SG+R E++E + +L+N +I PC+P +G++ ASGDL PLS++A +L G
Sbjct:    1 MVILTGRSLTLDDMEAILYKGVKVGLSQSCINEIEASRRAVEKIVQDGRTVYGINTGFGKFSDVQIAAADTEELQRNLILSHACGVGGYFSDE-------ISQAMMVLRANALAKGFSGVRLEVVEMLLELINKDIYPCIPSQGSLGASGDLAPLSHLALVLIG 157          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SHEWM (Histidine ammonia-lyase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hutH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.877e-18
Identity = 46/155 (29.68%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  334 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            TLT++Q+  I+ +   +EL++ A   +  SS  V + +++G   YG+ TGFG  ++ + ++     K+L     + +  +   +   +  +  R  M++++N+L +G+SGIR E++  + +L+N  + PC+P +G++ ASGDL PLS+++  L G
Sbjct:   10 TLTLSQIRDISRNKLTLELADEAIADINISSGIVQKIIDEGRTVYGINTGFGLLANTKIED-----KDLQLLQRSIVLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIQLVNAEVYPCVPEKGSVGASGDLAPLSHMSLTLLG 159          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPA (Histidine ammonia-lyase OS=Legionella pneumophila (strain Paris) GN=hutH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.877e-18
Identity = 50/154 (32.47%), Postives = 88/154 (57.14%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            L++  +  I     +  L+E A E ++AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP S     +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G
Sbjct:   12 LSLVSIKQILDEELSCVLAEHAFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDSVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLG 160          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_DESPS (Histidine ammonia-lyase OS=Desulfotalea psychrophila GN=hutH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.877e-18
Identity = 54/156 (34.62%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            LT+A++  +A +   V L E  +  + AS   V E + +G   YG+ TGFG  ++    N     LQ+ LI    AG+          +  S  R  M++++N+L +GYSGIR E++EA+ +LLN  + P +P +G++ ASGDL PL++++ +L G
Sbjct:   12 LTLAELRRMAKAPVGVRLEEKCKGKINASVQTVGEVIRQGRVIYGINTGFGLLANTIIPNEELEHLQRSLILSHAAGV-------GAFMADSTVRLMMVLKINSLARGYSGIRLEVIEALVQLLNAEVYPSVPQKGSVGASGDLAPLAHMSIVLLG 160          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_BACSU (Histidine ammonia-lyase OS=Bacillus subtilis GN=hutH PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.451e-18
Identity = 58/165 (35.15%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  313 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHR--RTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGR 801
            +V L G +LT A VA +         SE + E VK S   V   +      YG+ TGFG  S    + ++  ALQ  LI     G+           P   +RA +L+R N LL+G+SG+R E++E +   LN  + P +P +G++ ASGDL PLS++A  L G+
Sbjct:    1 MVTLDGSSLTTADVARVLFDFEEAAASEESMERVKKSRAAVERIVRDEKTIYGINTGFGKFSDVLIQKEDSAALQLNLILSHACGV-------GDPFPECVSRAMLLLRANALLKGFSGVRAELIEQLLAFLNKRVHPVIPQQGSLGASGDLAPLSHLALALIGQ 158          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPA (Histidine ammonia-lyase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hutH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.201e-18
Identity = 50/157 (31.85%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  334 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            TLT+AQ+  I+     +EL+ESA   +  S+  V + +++G   YG+ TGFG  ++ +        LQ+ ++    AG       +   +  +  R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PLS++   L G
Sbjct:   10 TLTLAQIREISRGKVTLELAESAIADINTSAGLVQQVLDEGRTVYGINTGFGLLANTKIAADDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAGVYPCVPEKGSVGASGDLAPLSHMCLPLLG 159          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPL (Histidine ammonia-lyase OS=Legionella pneumophila (strain Lens) GN=hutH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.201e-18
Identity = 52/154 (33.77%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            L++  +  I     +  L+ESA E + AS   V + +++    YG+ TGFG+ +++ T +   L KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G
Sbjct:   12 LSLLSIKQILDEGQSCVLAESAFELINASHQTVRKVIDEKKTVYGINTGFGSLANQ-TISADCL-KELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLG 160          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_VIBCH (Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.181e-18
Identity = 49/161 (30.43%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  337 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSK 813
            L++ Q+  ++ S   + L   A   +  S+  V + +++G   YG+ TGFG  ++ +   ++   LQK ++    AGI          +     R  ML+++N+L +GYSGIR E+++A+ +L+N+ I PC+P +G++ ASGDL PL++++ +L G   ++
Sbjct:   11 LSLKQLRQVSRSPVVLSLDPEAIPAIAESAQVVEQVISEGRTVYGINTGFGLLANTKIAPQDLETLQKSIVLSHAAGI-------GELMSDETVRLMMLLKINSLARGYSGIRLEVIQALIELVNNQIYPCVPKKGSVGASGDLAPLAHMSTVLLGEGQAR 164          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: HUTH_TREDE (Histidine ammonia-lyase OS=Treponema denticola GN=hutH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.181e-18
Identity = 56/163 (34.36%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  316 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR-TKN-GGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 798
            V + G +LT+  V A+A     V+LS  A++ +K S   V + +  G  +YG++TGFG  S    TK+  GALQ+ LI     G+        +  P    RA ML+R+NT   G+SG+   + + +  +LN  + P +P +G++ ASGDL  L++IA ++ G
Sbjct:    6 VTVTGSSLTIEDVVAVARHGAEVKLSADAKKRIKDSKKIVDDIVKSGKPTYGISTGFGELSTVTITKDQNGALQRNLILSHACGV-------GNPFPEDIVRAIMLLRLNTHASGFSGVTPSVPDILVDMLNKGVIPYVPEKGSLGASGDLANLAHIALVMIG 161          
The following BLAST results are available for this feature:
BLAST of FC877013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
HUTH_CITK81.100e-1832.92Histidine ammonia-lyase OS=Citrobacter koseri (str... [more]
HUTH_BACSK1.437e-1834.76Histidine ammonia-lyase OS=Bacillus clausii (strai... [more]
HUTH_SHEWM1.877e-1829.68Histidine ammonia-lyase OS=Shewanella woodyi (stra... [more]
HUTH_LEGPA1.877e-1832.47Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_DESPS1.877e-1834.62Histidine ammonia-lyase OS=Desulfotalea psychrophi... [more]
HUTH_BACSU2.451e-1835.15Histidine ammonia-lyase OS=Bacillus subtilis GN=hu... [more]
HUTH_SHEPA3.201e-1831.85Histidine ammonia-lyase OS=Shewanella pealeana (st... [more]
HUTH_LEGPL3.201e-1833.77Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_VIBCH4.181e-1830.43Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH... [more]
HUTH_TREDE4.181e-1834.36Histidine ammonia-lyase OS=Treponema denticola GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CD12RM1 EHR Citrus clementina cDNA clone KN0AAN3CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877013 ID=FC877013; Name=FC877013; organism=Citrus clementina; type=EST; length=820bp
GCACGAGGTAGACTTCAGAATTTCCTTTAGCTCATTCATTCTTCATCACT
CCCATTCATTCTTCTTCTTCTTCTTCTTCTTTCTACAGTTTTGGTATTTT
TTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGATAGGTGCCACT
ACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCAAGAATAA
CAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTGATGGCGG
AGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGTGGCGGAG
TACAGGAAGCCGGTGGTCAACCTCGGTGGTGAGACGTTGACCGTAGCACA
GGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGTCGGAATCTG
CCAGGGAAGGCGTCAAGGCCAGCAGTGATTGGGTGATGGAGAGCATGAAT
AAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGTGCCACTTCTCA
TCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATTAGATTTT
TGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCT
CACTCAGCAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCA
GGGCTACTCCGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGC
TCAATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCT
TCAGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCG
GCCCAATTCTAAGGCCACCG
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