FC877019

Overview
NameFC877019
Unique NameFC877019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: TNNC2_CHICK (Troponin C, skeletal muscle OS=Gallus gallus GN=TNNC2 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 5.819e-25
Identity = 56/127 (44.09%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 GDGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            G G I+TKELGT +R   G  P +     +I EVD DG+GTI F EFL +M R+MK+     SEEEL   FR+FDK+ +GFI   EL  ++   GE +T+E+++++++++D + DG+I+++EF+K+M
Sbjct:   34 GGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 159          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.600e-25
Identity = 58/127 (45.67%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 GDGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            G G I+TKELGT +R   G  P R     +I EVD DG+GTI F EFL +M R++K+     SEEEL E FRVFDK+ +GFI   E   ++ + GE +++EE+DE++ + D + DG+I+++E++K+M
Sbjct:   31 GGGDISTKELGTVMRML-GQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CETN2_HUMAN (Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.600e-25
Identity = 55/124 (44.35%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 GDGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            G G I  KEL  A+R   G  P +   + +I+E+D +G G + F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG+++ +EF+++M
Sbjct:   44 GTGTIDVKELKVAMRAL-GFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 166          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 55/126 (43.65%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 DGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            DGCI+TKELG  +R   G  P     + +I+EVD DG+GT+ F EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 55/126 (43.65%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 DGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            DGCI+TKELG  +R   G  P     + +I+EVD DG+GT+ F EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 55/126 (43.65%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 DGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            DGCI+TKELG  +R   G  P     + +I+EVD DG+GT+ F EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 58/124 (46.77%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 GDGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            G G I  KEL  A+R   G  P +   + +I ++D  G+GTI F EFL +M  KM + DS EE+ +AF++FD D  GFI+   L+ V   LGE LTDEE+ EM  EAD +GDGQI+ +EF ++M
Sbjct:   41 GSGTIDAKELKVAMRAL-GFEPKKEEIKKMIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIM 163          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.296e-24
Identity = 55/126 (43.65%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 DGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            DGCI+TKELG  +R   G  P     + +I+EVD DG+GT+ F EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.296e-24
Identity = 55/126 (43.65%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 DGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            DGCI+TKELG  +R   G  P     + +I+EVD DG+GT+ F EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of FC877019 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.211e-24
Identity = 54/126 (42.86%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 DGCITTKELGTAVRCTAGVTPLRRSSRTVINEVDADGNGTIGFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 372
            DGCI+TKELG  +R   G  P     + +I+EVD DG+GT+ F EFL +M R MKD     +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
The following BLAST results are available for this feature:
BLAST of FC877019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
TNNC2_CHICK5.819e-2544.09Troponin C, skeletal muscle OS=Gallus gallus GN=TN... [more]
TNNC2_ANGAN7.600e-2545.67Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
CETN2_HUMAN7.600e-2544.35Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1[more]
TNNC1_PIG9.926e-2543.65Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE9.926e-2543.65Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN9.926e-2543.65Troponin C, slow skeletal and cardiac muscles OS=B... [more]
CATR_DUNSA9.926e-2546.77Caltractin OS=Dunaliella salina PE=2 SV=1[more]
TNNC1_RABIT1.296e-2443.65Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_HUMAN1.296e-2443.65Troponin C, slow skeletal and cardiac muscles OS=H... [more]
TNNC1_CHICK2.211e-2442.86Troponin C, slow skeletal and cardiac muscles OS=G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1DH11RM1 EHR Citrus clementina cDNA clone KN0AAN1DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877019 ID=FC877019; Name=FC877019; organism=Citrus clementina; type=EST; length=598bp
GGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGCTGTGAGGTGCAC
TGCGGGCGTAACCCCACTGAGGCGGAGCTCCCGGACAGTGATCAATGAAG
TGGATGCTGATGGTAATGGAACTATTGGTTTTCCTGAATTCCTAAACCTC
ATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGC
CTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAGC
TGCGCCATGTGATGACAAACCTAGGAGAGAAACTTACTGATGAAGAAGTT
GATGAGATGATAAGGGAAGCTGATGTTGATGGTGATGGCCAGATAAATTA
TGAGGAATTTGTCAAGGTTATGATGGCCAAGTAATGACCCCAACCCACCA
ATACTTATAAAATGGGTTGACTAAATTATAAAGGGATTCCTAGTTTTCTC
TTTTACAATTTTTAATTTGATAGTCATGAGGGTCAGGCTAAAGGAAGCAA
TGGTCTTTTAATGGTGATGGGCCTGATGGTGTAGGACAAATGTTGTCTCC
CTCGTCAATATGTCTTGTGACTCGCAACACTTTTCGGTTTTTATTATT
back to top