FC877028

Overview
NameFC877028
Unique NameFC877028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:772..1640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SECY_METTH (Preprotein translocase subunit secY OS=Methanobacterium thermoautotrophicum GN=secY PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.666e-36
Identity = 91/263 (34.60%), Postives = 139/263 (52.85%), Query Frame = 1
Query:   16 GAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVR----SKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 786
            G +    +LL T Q+        F    LP    +LA + VFL+VVY +  +V +P+      + +RG  G YP++  Y SNMP+IL SAL+ N+  ++ +  +         +LG     +       V GLAY +TAP S+  +  +PF  +FY V  +  C LF+  W+E+S    R VA+QL +  M +PG R S    +K L RYIPT    GG  +G L  +AD  G++G GTG+LL V I+Y+ +E   +E+  ++
Sbjct:  205 GRITGFLYLLFTGQSP------DFQYYVLP----VLALIAVFLVVVYAESMRVEIPISMGGGKRLSRGAVGKYPLRFIYASNMPVILTSALLLNVQLLANVFQK-----LGYPILGTVSNGQ------AVDGLAYLLTAPRSIDALILDPFRVVFYAVVFIGLCVLFAWLWVEISNIGPRHVARQLYQMGMQIPGFRSSRGQFEKILKRYIPTITILGGAFVGLLAFVADLTGSLGGGTGVLLTVGIVYRLYEEIAQEQLMDM 446          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: YGMH_SCHPO (Uncharacterized protein C19G7.17 OS=Schizosaccharomyces pombe GN=SPBC19G7.17 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.044e-30
Identity = 72/251 (28.69%), Postives = 129/251 (51.39%), Query Frame = 1
Query:   10 FEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESE-YSGHSIP-VGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFE 756
            ++GA++     L + +NK  +LR   +R    +    L  + VF   +Y    ++ +P+RS   RG +  +P+KL YTS +P+I   +++S+L   +  LY     +    LL ++   + ++ H +  VGGL Y++  P  L++   +P H + Y + ++     FS  W+  +    RDV    KE Q+V+ G+R++ + KEL + IP AA      +  L+V+A    A   G G+L+A  ++Y  FE
Sbjct:  213 YQGALVGFAFNLFSFKNKFSSLRSILFRSEGLSFVQFLVCIAVFATFMYTLNIRIDVPIRSSRVRGVRQNFPLKLLYTSVIPLIYFYSILSHLLVFAYALYSLCPNSLITRLLVQYSPIDTFAEHKLQLVGGLVYFLYPPLGLSEALLHPVHTVIYTITLICITIYFSLLWMNATAGGPRDVLLFFKENQLVIAGYREATMLKELEKIIPIAAKLSAFFVSILSVIAGIF-ASTFGVGVLIASALVYASFE 462          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SECY_HALVO (Preprotein translocase subunit secY OS=Halobacterium volcanii GN=secY PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.191e-30
Identity = 78/237 (32.91%), Postives = 128/237 (54.01%), Query Frame = 1
Query:  118 LLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLAD-------MAANP----FHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG-SGTGILLAVTIIYQYFETFEKERASEL 786
            L+ T+L+F IVVY +  +V +P+     +G +G +P+KL Y S +P+IL  AL +N+ F+ + L   + G      +  W     SG     GGL YY+    S +D        +A+P       L  L+FM+   A+F+  W+E +G   +  A+Q++   M +PG R +   +++ + RYIP     GG  +G L V+A+ +G IG SGTG+LL V+I Y+ +E   +E+  E+
Sbjct:  249 LITTLLIFGIVVYAESVRVEIPLSHARVKGARGRFPVKLIYASVLPMILVRALQANIQFLGRFLNSSWVG------MPAWLGQYTSGQ--VTGGLLYYLAPIQSRSDWMWFLGLTSADPLDIAIRVLIDLIFMIVGGAVFAIFWVETTGMGPKSTAQQIQNSGMQIPGFRRNPQVIERVMERYIPQVTVIGGALVGLLAVMANMLGTIGASGTGLLLTVSITYKLYEEIAEEQLMEM 477          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SECY_ARCFU (Preprotein translocase subunit secY OS=Archaeoglobus fulgidus GN=secY PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.191e-30
Identity = 84/247 (34.01%), Postives = 134/247 (54.25%), Query Frame = 1
Query:  109 ITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLAD------------MAANP-----FHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 786
            I  L+ T  + L+VV+F+G +V +P+    ARG +G +PIKL Y S +P+I   AL +N+  + Q+L+ +      V + G++   +       V GL +++   +S  D             AA P      H L   + ++    +F+  W+E SG  AR VA Q+ +  M +PG R S   L++ L+RYIP     GG  IG LT++A+ +G IG  SGTG+LLAV+I Y+++E   KE+ +E+
Sbjct:  246 ILALITTAAIILLVVFFEGTRVEIPLAHAVARGARGRFPIKLIYASVLPMIFVRALQANVVALGQVLHAR-----GVTIFGEFVNGK------AVSGLMFFLQPVSSPYDWIPSLVKSQGAAFAAIPDWMIYLHLLIDALILVVGGIIFAWFWVETSGMDARTVASQIAKSGMQVPGFRKSPQVLERVLSRYIPKVTILGGAIIGILTLVANMLGTIGNVSGTGLLLAVSIAYRFYEDLAKEQLTEM 481          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SSH1_YEAST (Sec sixty-one protein homolog OS=Saccharomyces cerevisiae GN=SSH1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.577e-29
Identity = 74/245 (30.20%), Postives = 126/245 (51.43%), Query Frame = 1
Query:   13 EGAVIALFHLLITKQNK-VGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFIS----QLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAV 732
            +GA+I L   L +K    +G +  AF R  LPN+T  +  + + +IV Y Q  +V LP+RS  ARG    YPIKL YT  + ++    ++  ++  +    QL+ +    +    ++G + E+  +  ++P   L+      +    +   P   + Y  F+L     F+  W  +SGSSARDVA + K+Q + + G R+ N+ KELN+ IP AA  G   +  +TV+ + +G  G   GI++ +
Sbjct:  214 QGALINLIQGLRSKHKTFIGGIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHY-ENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKVIPIAAVTGASVLSLITVIGESLGLKGKAAGIVVGI 457          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SECY_HALMA (Preprotein translocase subunit secY OS=Haloarcula marismortui GN=secY PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 7.496e-29
Identity = 85/278 (30.58%), Postives = 136/278 (48.92%), Query Frame = 1
Query:    7 GFEGAVIALFHLLITKQNKVGALREAFYRQNL---PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADM------AANPFHALFY-----LVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 786
            G    +I  ++L IT +   G +  A   Q +     +  L  TVL+F +VVY +  +V +P+ +   +G +G +P+KL Y S +P+IL  AL +N+ F+ ++L  +         LG +   +      P GGL Y++    S  D        A P   +       L  ML   A+F+  W+E +       AKQ+    M +PG R +   ++K L RYIP     GG  +G L V+A+ +G IG  SGTG+LL V+I Y+ +E   +E+  E+
Sbjct:  209 GNSEGIIYTWYLFITGERGTGPVLAADGLQTVLLQGELLGLFTTVLIFAVVVYAESVRVEIPLSNARVKGARGRFPVKLIYASVLPMILVRALQANIQFLGRILNAQLGS--MPAFLGTYANGQ------PTGGLFYFLAPIQSRGDWMWWLEGTAQPVWQILTRVGIDLFVMLVGGAVFAVFWVETTDMGPEATAKQIHNSGMQIPGFRQNVGVIEKVLERYIPQVTVIGGALVGLLAVMANMLGTIGGVSGTGLLLTVSITYKLYEEIAEEQLMEM 478          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SECY_HALSA (Preprotein translocase subunit secY OS=Halobacterium salinarium GN=secY PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.846e-27
Identity = 75/241 (31.12%), Postives = 125/241 (51.87%), Query Frame = 1
Query:  109 ITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPAS-------LADMAANPFHALFY----LVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 786
            I  LL T+ ++++VVY +  +V +P+     +G +G +P+KL Y S +P+IL  AL +N+ F+ Q+L      N  +  +  W    Y G+    GGL YY+    S        +   A  +  L      L FM+   A+F+  W+E +       A+Q++   M +PG R +   ++K + RYIP     GG  +G L V+A+ +G IG  SGTG+LL ++I Y+ +E   +E+  E+
Sbjct:  246 ILGLLTTLFIYVVVVYAESVRVEIPLSHARVKGARGRFPVKLIYASVLPMILVRALQANIQFLGQIL------NSTLASMPTWL-GVYGGNGQVTGGLFYYLAPIYSPNAWMWWTSGATAARWQVLIRIAIDLSFMIIGGAIFAIFWVETADMGPDATARQIQNSGMQIPGFRKNQGVIEKVMERYIPQVTVIGGALVGLLAVMANMLGTIGNVSGTGLLLTISITYKLYEEIAEEQMMEM 479          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SECY_AERPE (Preprotein translocase subunit secY OS=Aeropyrum pernix GN=secY PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 68/229 (29.69%), Postives = 119/229 (51.97%), Query Frame = 1
Query:  103 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 783
            P++T    T+   +++VY Q  +V +P+ S+  +G +   P++  Y +N+PI+L   LVS+L  + +LL          + LG  +   Y  +S     + YY++ P  +    A+P     ++        +F   W+E++G + R+ A++L +  + +PG R     L++ L RYI        + + AL ++AD  GA G+GTG+LLAV II QY+    +ERA E
Sbjct:  229 PDLTGFFTTLAAIILLVYLQAMRVEIPITSERFKGIRSRVPLQFIYVTNIPILLVGILVSDLLLVQRLL---------ADYLGV-ESRAYQIYS----SIVYYLSPPRGVVQSIADPVKTAVFIASWTVLSIVFGYMWVEIAGLNPREQAERLIKGGLAIPGMRSDPRVLERVLRRYIYPLTFLSSLIVAALVIVADIFGAYGTGTGLLLAVGIINQYYAMITRERALE 443          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SECY_SULSO (Preprotein translocase subunit secY OS=Sulfolobus solfataricus GN=secY PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.051e-22
Identity = 68/234 (29.06%), Postives = 113/234 (48.29%), Query Frame = 1
Query:  103 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYV----TAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 786
            P++  L+ T+ + +I +Y     + +PV S+  RG +   P+   Y S++P+I  + L S++   + L    Y      N+L              V G+ ++       P S+  +  +P  AL Y V  +    LF   W++V+G      A+QL E  + +PG R++   ++  L RYI   A F  + +G + V A  +GA G+G GILLAVTI  QY+     ER+ E+
Sbjct:  240 PDLVGLVTTIALIIITIYLTTMTIEIPVTSQKLRGIRRTIPLNFLYVSSIPVIFVAVLGSDIQLFASLA--SYVSPSASNILNT------------VSGVFFFPPPNSAIPHSIYAVVLDPLGALEYAVVFIVLSILFGILWVDVAGLDPATQAQQLVEAGIEIPGVRNNPKIIEGILARYIYPLAFFSSIIVGLIAVFATLLGAYGTGIGILLAVTIAIQYYSLLAYERSLEM 459          
BLAST of FC877028 vs. ExPASy Swiss-Prot
Match: SECY_SULAC (Preprotein translocase subunit secY OS=Sulfolobus acidocaldarius GN=secY PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.729e-20
Identity = 60/230 (26.09%), Postives = 109/230 (47.39%), Query Frame = 1
Query:  103 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 786
            P++  L+ATV + +++VY     + +PV ++  RG +   P+   Y S++P+I  S L +++   + L       N   N          +    P  G+      P S+  +  +P  A  Y    +    +F   WI+V+G   +  A+Q+    + +PG R +   ++  L++YI     F  + +G + V+A F+G  G+G G+LLA+TI  QY+     ER  E+
Sbjct:  236 PDLIGLIATVGLTILIVYLVNTNIYIPVTTQRLRGIRTTVPLNFLYVSSIPVIFVSVLGADIQLFASL------ANSISNSASGILTDIANAFFFPPQGV------PHSVYALVVDPVGAAIYAAVFIVLSIVFGMLWIDVAGLDPKTQAEQMIRSGIEIPGMRTNPRIIEGILSKYIYALGFFSSLIVGLIAVVATFLGTYGTGVGLLLAITIAMQYYNLLAYERTLEM 453          
The following BLAST results are available for this feature:
BLAST of FC877028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SECY_METTH1.666e-3634.60Preprotein translocase subunit secY OS=Methanobact... [more]
YGMH_SCHPO3.044e-3028.69Uncharacterized protein C19G7.17 OS=Schizosaccharo... [more]
SECY_HALVO5.191e-3032.91Preprotein translocase subunit secY OS=Halobacteri... [more]
SECY_ARCFU5.191e-3034.01Preprotein translocase subunit secY OS=Archaeoglob... [more]
SSH1_YEAST2.577e-2930.20Sec sixty-one protein homolog OS=Saccharomyces cer... [more]
SECY_HALMA7.496e-2930.58Preprotein translocase subunit secY OS=Haloarcula ... [more]
SECY_HALSA1.846e-2731.12Preprotein translocase subunit secY OS=Halobacteri... [more]
SECY_AERPE1.197e-2629.69Preprotein translocase subunit secY OS=Aeropyrum p... [more]
SECY_SULSO3.051e-2229.06Preprotein translocase subunit secY OS=Sulfolobus ... [more]
SECY_SULAC3.729e-2026.09Preprotein translocase subunit secY OS=Sulfolobus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CE10RM1 EHR Citrus clementina cDNA clone KN0AAN3CE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877028 ID=FC877028; Name=FC877028; organism=Citrus clementina; type=EST; length=869bp
GCACGAGGATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAAC
CAAGCAAAACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACC
TTCCCAATATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTT
GTCTACTTTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGC
CCGTGGGCAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACA
TGCCTATCATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCT
CAGTTGCTCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGG
GAAGTGGAAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCC
TAGCTTATTATGTCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAAT
CCTTTCCATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCT
TTTCTCGAAAACTTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGG
CCAAGCAGCTTAAGGAGCAACAAATGGTGATGCCTGGACATAGAGACTCA
AATCTTCAAAAGGAACTGAACCGGTACATACCAACTGCTGCTGCCTTTGG
TGGAGTGTGCATTGGTGCATTAACAGTCCTGGCTGATTTCATGGGAGCAA
TTGGGTCAGGAACTGGGATATTGCTCGCAGTTACGATCATATATCAGTAC
TTTGAGACGTTTGAGAAGGAGAGAGCTAGTGAACTTGGCTTCTTTGGCTT
TTAATACACCAATGATCTTGAGTTTCAGATTATTTGGTGAGTAGTATTGT
GCAATATTGTTGCAGAATT
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