FC877165

Overview
NameFC877165
Unique NameFC877165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 2.091e-62
Identity = 121/251 (48.21%), Postives = 162/251 (64.54%), Query Frame = 1
Query:   61 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPV 813
            TAG+VI+CKAAV W   +P  IE++EVAPP+  EVR+KIL T +C TD +  +       FP I GHEA GIVESVGE VT ++PGD V+P+F  +C+EC  C + E N+C    + T RGV+  DG +RF+ KGKP+ HF+ TSTF+EYTV     VAKI+  AP +K C++ CG STG+GA V  AK   G T A+F             + + ASRIIG+D+N  +F +A   G TE +NP+D+ KP+
Sbjct:    3 TAGKVIKCKAAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKGT-MVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLCIRSDL-TGRGVLA-DGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAKVSPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGIDINKDKFQKALDVGATECINPRDFTKPI 250          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.312e-61
Identity = 120/256 (46.88%), Postives = 155/256 (60.55%), Query Frame = 1
Query:   46 INMSGTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPV 813
            +  S TAG++I CKAAVAW+   PL IE V+V PP+ +EVR+KI+ + +CHTD Y    K    LFP I GHE  GIVESVG  VT +Q GD V+ ++T ECK C  C S ++N+C  +R    +G+M  DG SRFS  G  + HF+G STFSEYTV     V  I   APLD VC+L CGI+TG+GA    A  K+G +VA+F                 A RI G+D+NP + N A  FG T+F+NP D   P+
Sbjct:    1 MQQSPTAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLM-PDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDLQSPI 255          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.019e-61
Identity = 114/244 (46.72%), Postives = 156/244 (63.93%), Query Frame = 1
Query:   61 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNP 792
            T GQ+I+CKAAVAWEAGK L IEE+EV PP+ +EVR+K+ FT +CHTD Y          FP +FGHE  G+VESVGEGV  ++ GD V+ ++T EC+EC  C S ++N+C  +R    +G ++ DG SRF  KGK ++H++G S+FS+YTV     V K+   AP DK C+L CG++TG+GA +N AK  KG  + +F                 AS II +D+N S+   A +FG T+FVNP
Sbjct:    3 TEGQIIKCKAAVAWEAGKDLSIEEIEVLPPRAHEVRVKVEFTGVCHTDAYTLSGADAEGSFPVVFGHEGAGVVESVGEGVESVKVGDSVVLLYTPECRECKFCLSGKTNLCGKIRATQGKG-LLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISKGDKIGVFGAGCIGLSVIQGAVSKGASEIIVIDINDSKKAWADQFGATKFVNP 245          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 3.019e-61
Identity = 114/255 (44.71%), Postives = 166/255 (65.10%), Query Frame = 1
Query:   58 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLR---INTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPV 813
            GT G+VI+CKAA+AW+ G PL IEE+EV+PP+  EVR++++ T +C TD+   + K +  LFP + GHE  GIVESVG GVT+ +PGD V+P F  +CK C  C S  +N+C  LR     T    ++ D  SRF+ KG+ IYHF+G S+FS+YTV     +A+++  A L++VC++ CG S+G+GA +N AK   G T A+F             +++ ASRII +D+N  +F +AK  G T+ +NP++ DKPV
Sbjct:    2 GTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPV 255          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.726e-61
Identity = 119/245 (48.57%), Postives = 158/245 (64.49%), Query Frame = 1
Query:   76 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFS-IKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDK 807
            IRCKAAV+ +AG+PLV+EE+ VAPPQ  EVR++I+ T+LCH+DV FW+ +     FPRI GHEA G+VESVGE V ++  GD VLP F  +C +C  C S +SN+C          +   D  SRF+ + G+ ++HF+  S+FSEYTV  V  V KI+ + P  + C+LSCG+STG GA    AK +KG TV IF             R+  ASRIIGVD+NP++F   +KFGVTEFVN    +K
Sbjct:   17 IRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTEFVNSMTCEK 261          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 8.784e-61
Identity = 117/255 (45.88%), Postives = 162/255 (63.53%), Query Frame = 1
Query:   58 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGV---MINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPV 813
            GT G+VI+CKAA+AWEAGKPL IEEVEVAPP+ +EVR++I    LC +D +    K +    P I GHE  GIVESVG GVT+++PGD V+P++   CK+C  C S  +N C+      +  +   ++ D  SRF+ KGK IYHF G S FS+YTV     +AKI+  A L++VC++ CG STG+GA +N AK   G T A+F             + + ASRII +D+N  +F +AK  G T+ +NP++ +KPV
Sbjct:    2 GTKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQINAAGLCRSDTHVINPKFEGAFLPVILGHEGAGIVESVGPGVTNVKPGDKVIPLYIPHCKKCKFCLSPLTNFCEKFCKGKNPLIEQELMEDKTSRFTCKGKSIYHFFGISAFSQYTVVKDVNLAKIDDDANLERVCLIGCGFSTGYGAAINTAKVTPGSTCAVFGLGGVGLSAIMGCKTAGASRIIAIDINSDKFAKAKALGATDCLNPRELNKPV 256          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.338e-60
Identity = 114/249 (45.78%), Postives = 160/249 (64.26%), Query Frame = 1
Query:   55 SGTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRF-SIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNPKD 798
            + T G+ I+C AAVA++A KPL +EE+ V  P+ +EVR+KI +T++CHTD Y         LFP + GHE  GIVESVG+ V  ++PGDHV+ ++T EC +C  C S ++N+C  +R    +GVM  DG +RF + KG+ IYHF+G STFSEYTV     V  I+P APLD  C+L CG++TGFGA +  A  +KG TVA+F             ++  AS+II +D+N  +     +FG T+FVNPK+
Sbjct:    3 AATVGKPIKCIAAVAYDAKKPLSVEEITVDAPKAHEVRIKIEYTAVCHTDAYTLSGSDPEGLFPCVLGHEGAGIVESVGDDVITVKPGDHVIALYTAECGKCKFCTSGKTNLCGAVRATQGKGVM-PDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTANVQKGDTVAVFGCGTVGLSVIQGAKLRGASKIIAIDINNKKKQYCSQFGATDFVNPKE 250          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 4.360e-60
Identity = 116/254 (45.67%), Postives = 162/254 (63.78%), Query Frame = 1
Query:   61 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGV---MINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPV 813
            T G+VI+CKAA+AWEAGKPL IEEVEVAPP+ +EVR++I+  S+C +D Y      +  L P I GHE  GIVESVG GV + +PGD V+P++   C++C  C S  +N C     + +  +   +++D  SRF+ KGK IYHF+G S FS+YTV     +AKI+  A L +VC++ CG STG+GA +N AK   G T A+F             + + ASRII VD+N  +F +AK  G T+ +NP++ +KPV
Sbjct:    3 TKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPGVNNFKPGDKVIPLYVPHCRKCKFCQSPLTNFCTKFSEHKNPIIEQELMDDKTSRFTCKGKSIYHFLGISAFSQYTVVKDINLAKIDDDANLKRVCLIGCGFSTGYGAAINDAKVTPGSTCAVFGLGGVGLSAVIGCKTAGASRIIAVDINSDKFAKAKALGATDCLNPRELNKPV 256          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.694e-60
Identity = 118/244 (48.36%), Postives = 152/244 (62.30%), Query Frame = 1
Query:   61 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNP 792
            T G+ I CKAAVAWEA KPL IE+V VAPP+++EVR+K+  T +CHTD Y          FP I GHE  GIVES+GEGVT+++ GDHV+ ++T EC EC  C S ++N+C  +R    +GVM  DG SRF+ KGK I HF+G STFS+YTV     V  INP A  DK C+L CGI+TG+GA    A  +KG  VA+F                 A++II VD++  +    +K G T FVNP
Sbjct:    5 TVGKPITCKAAVAWEAAKPLSIEDVTVAPPKRHEVRIKLYDTGVCHTDAYTLSGVDPEGAFPVILGHEGAGIVESIGEGVTNVKVGDHVIALYTPECGECKFCKSGKTNLCGKIRATQGKGVM-PDGTSRFTCKGKEILHFMGCSTFSQYTVVADISVVAINPKAEFDKACLLGCGITTGYGAATITANVQKGDNVAVFGGGIVGLSVIQGCAERGAAQIILVDISDKKEEWGQKLGATAFVNP 247          
BLAST of FC877165 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.657e-59
Identity = 112/255 (43.92%), Postives = 163/255 (63.92%), Query Frame = 1
Query:   58 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLR---INTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFXXXXXXXXXXXXXRVSWASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPV 813
            GT G+VI CKAA+AW+   PL IEE+EV+PP+ +EVR+K++ T +C TD+     K +  LFP + GHE  GIVESVG GVT+ +PGD V+P F  +CK+C  C S  +N+C  LR     T    ++ D  SRF+ K + IYHF+G S+FS+YTV     +A+++  A L++VC++ CG ++G+GA +N AK   G   A+F             +++ ASRII +D+N  +F +AK  G T+ +NP+D DKPV
Sbjct:    2 GTQGKVITCKAAIAWKTDSPLCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPKKKA-LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKKCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTSKERSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFTSGYGAAINTAKVTPGSACAVFGLGCVGLSAVIGCKIAGASRIIAIDINSEKFPKAKALGATDCLNPRDLDKPV 255          
The following BLAST results are available for this feature:
BLAST of FC877165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
ADH7_RAT2.091e-6248.21Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
FADH2_SCHPO2.312e-6146.88Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
FADH_PICPA3.019e-6146.72S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADH4_MOUSE3.019e-6144.71Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADHL7_ARATH6.726e-6148.57Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
ADHP_RABIT8.784e-6145.88Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
FADH_YEAST3.338e-6045.78S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADHQ_RABIT4.360e-6045.67Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
FADH_CANMA5.694e-6048.36S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADH4_RAT1.657e-5943.92Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2AG09RM1 EHR Citrus clementina cDNA clone KN0AAN2AG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877165 ID=FC877165; Name=FC877165; organism=Citrus clementina; type=EST; length=813bp
GCACGAGGGCTAATTTTACAGGTGTTGAGAGTATCATCATTCATCATCAA
TATGTCTGGCACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCAT
GGGAGGCGGGGAAGCCACTAGTGATTGAAGAAGTGGAGGTGGCTCCACCA
CAGAAAAATGAAGTTCGATTGAAGATCCTCTTCACCTCTTTATGCCATAC
TGATGTTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCA
TTTTTGGTCATGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTA
ACTGATCTCCAACCAGGAGACCATGTTCTTCCTGTATTCACAGGAGAGTG
CAAGGAATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCC
TCCGGATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCAAGG
TTCTCGATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTT
CAGTGAATACACTGTTACCCACGTCGGTTGTGTTGCTAAGATCAATCCTG
CTGCCCCTCTTGACAAAGTTTGTGTACTCAGCTGCGGAATCTCCACAGGT
TTTGGGGCTACTGTTAATGTTGCCAAACCGAAGAAGGGCCAGACTGTTGC
CATTTTTGGATTGGGTGCAGTTGGCCTTGCTGCTGCCGAAGGGGCAAGAG
TATCATGGGCTTCCAGGATCATTGGTGTTGATTTGAACCCAAGCAGATTC
AATGAAGCCAAGAAGTTTGGGGTTACCGAGTTTGTGAATCCAAAAGATTA
TGACAAACCTGTT
back to top