FC877185

Overview
NameFC877185
Unique NameFC877185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.580e-59
Identity = 105/137 (76.64%), Postives = 129/137 (94.16%), Query Frame = 3
Query:  102 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 512
            MAN+ASGMAV D+CKLKF ELK+KR++RFI FKI+E+ +QVVV++LG+P D+Y++FTAS+PA ECRYAV+DFDFVTDENCQKSKI FI+WSPDTSKVRSKM+YASSKDRFKRELDGIQVELQATDP+EM +D++++R
Sbjct:    1 MANSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKAR 137          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.282e-58
Identity = 106/139 (76.26%), Postives = 124/139 (89.21%), Query Frame = 3
Query:  102 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 518
            MANAASGMAV DDCKLKF+ELK KRT+RFI++KIEE QKQV+VEK+GEP  ++E+  ASLPADECRYA++DFDFV+ E   +S+I F+AWSPDT++VRSKMIYASSKDRFKRELDGIQVELQATDPTEM LDV +SR N
Sbjct:    1 MANAASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.981e-58
Identity = 106/137 (77.37%), Postives = 127/137 (92.70%), Query Frame = 3
Query:  102 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 512
            MANAASGMAV+D+CKLKFLELK+KR YRFI+F+I+ +Q  VVVEKLG P ++Y++FTASLPA+ECRYAV+DFDF+TDENCQKSKI FIAWSPD+S+VR KM+YASSKDRFKRELDGIQVELQATDP+EM  D+++SR
Sbjct:    1 MANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQ--VVVEKLGNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSR 135          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.028e-55
Identity = 104/137 (75.91%), Postives = 122/137 (89.05%), Query Frame = 3
Query:  102 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 512
            MANAASGMAV+D+CKLKFLELKAKR YRFI+F+I+ +Q  VVVEKLG P ++Y++FT  LP +ECRYAVYDFDF T EN QKSKI FIAWSPD+S+VR KM+YASSKDRFKRELDGIQVELQATDP+EM LD+++SR
Sbjct:    1 MANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQ--VVVEKLGSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSR 135          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.410e-54
Identity = 95/139 (68.35%), Postives = 122/139 (87.77%), Query Frame = 3
Query:  102 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 518
            MAN+ASG+AV+D+CK KF ELK +R +RFIVFKI++K  ++ VE+LG+ ++ YE+F A+LPADECRYAVYD DFVTDENCQKSKI F +WSPDT++ RSKM+YASSKDRF+RELDGIQ E+QATDP+EM LD++R+R +
Sbjct:    1 MANSASGLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH 139          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.922e-54
Identity = 93/139 (66.91%), Postives = 122/139 (87.77%), Query Frame = 3
Query:  102 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 518
            MAN++SG+AV D+CK+KF +LKA+R++RFIVF+I++K  ++ V++LGEP+  Y +FT SLPADECRYA+YD DF T ENCQKSKI F +WSPDT++ RSKM+YASSKDRF+RELDGIQ E+QATDP+EM LD+++SRTN
Sbjct:    1 MANSSSGLAVSDECKVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.210e-53
Identity = 93/139 (66.91%), Postives = 122/139 (87.77%), Query Frame = 3
Query:  102 MANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 518
            MAN++SG+AV+D+CK+KF ELK++RT+RFIVF+I++   ++ V++LGEP+  Y +FT SLPA+ECRYA+YD DF T ENCQKSKI F +WSPDT++ RSKM+YASSKDRF+RELDGIQ E+QATDP+EM LD++RSRTN
Sbjct:    1 MANSSSGLAVNDECKVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.287e-50
Identity = 95/127 (74.80%), Postives = 115/127 (90.55%), Query Frame = 3
Query:  132 DDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 512
            +D+CKLKFLELK KR +RFI+F+I+ +Q  VVVEKLG P ++Y++FTASLPADECRYAV+DFDF T+ENCQKSKI FIAWSPD+S+VR KM+YASSKDRFKRELDGIQVELQATDP+EM  D+++SR
Sbjct:    1 EDNCKLKFLELK-KRIFRFIIFRIDGQQ--VVVEKLGNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSR 124          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.692e-50
Identity = 88/137 (64.23%), Postives = 117/137 (85.40%), Query Frame = 3
Query:  108 NAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 518
            NA+SGM V D  K  FLELK K+ +R+++FKI+EK+K+VVVEK G P++S++ F A+LP ++CRYAVYDFDFVT ENCQKSKI FIAWSPD+S++R+KM+YA+SK+RF+RELDG+  E+QATDPTEM L+V+R R +
Sbjct:    7 NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of FC877185 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.063e-47
Identity = 87/143 (60.84%), Postives = 117/143 (81.82%), Query Frame = 3
Query:   90 FLQKMANAASGMAVDDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 518
            F++  +NA+SGM V  D +  FLEL+ K+ +R+++FKIEEKQKQVVVEK G  ++SY++F ASLP ++CRYA+YDFDFVT EN QKSKI FIAWSP TS++R+KM+Y++SKDR K+ELDG   E+QATDPTE+ L+V+R R +
Sbjct:    3 FMRSHSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
The following BLAST results are available for this feature:
BLAST of FC877185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ADF6_ORYSJ1.580e-5976.64Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF3_ARATH2.282e-5876.26Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF7_ARATH2.981e-5877.37Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF12_ARATH4.028e-5575.91Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF9_ORYSJ3.410e-5468.35Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF2_MAIZE9.922e-5466.91Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF1_MAIZE2.210e-5366.91Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF_BRANA2.287e-5074.80Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF_VITVI8.692e-5064.23Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF2_ORYSJ1.063e-4760.84Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2AH08RM1 EHR Citrus clementina cDNA clone KN0AAN2AH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877185 ID=FC877185; Name=FC877185; organism=Citrus clementina; type=EST; length=680bp
GCACGAGGGCCGCATCTGTCCTTCTCTCTCTTTCTCACTATAGAATCCCT
AGATTTTCTCTCAATTTCCCTCATTTTCTCTCCCCTTTTTTTCTCCAGAA
AATGGCAAATGCAGCATCTGGAATGGCAGTCGACGATGACTGCAAGCTGA
AGTTTTTGGAATTGAAGGCAAAAAGGACTTACCGCTTCATAGTTTTCAAG
ATTGAAGAGAAGCAGAAGCAGGTTGTTGTGGAGAAGCTTGGTGAACCATC
TGATAGTTATGAGAATTTCACTGCTAGCCTCCCAGCGGATGAGTGCCGAT
ACGCTGTCTACGATTTTGACTTTGTGACTGATGAGAACTGCCAGAAGAGC
AAGATTATTTTCATTGCATGGTCCCCCGACACCTCAAAGGTGAGAAGCAA
GATGATTTATGCTAGCTCCAAGGACAGGTTCAAGAGAGAATTGGATGGAA
TTCAGGTAGAGTTGCAGGCTACTGATCCTACTGAGATGGGTCTTGATGTC
ATGAGAAGCCGCACAAATTAAATTTTAGACTTGCCTATGGTGCAATGGAA
AGCCCATACTATATTGTTCACTTAAATGTAATGTCTATATCTTTTATGAC
TTATAACTTGCTTTGCTATCAGCTTGTGGTCGGAGTTAAATACTTTTTTA
AGTTGTCTTCTCATTTGTTATATCTGTGGA
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