FC877251

Overview
NameFC877251
Unique NameFC877251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE5_YEAST (NADP-specific glutamate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=GDH3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 67/208 (32.21%), Postives = 102/208 (49.04%), Query Frame = 3
Query:    9 LVFFAQLIL--ADMNKE-LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-----RSKYYDEAKPWNE--RCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKAN---------VLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            LV++ Q ++  A   KE  +G R  +SGSG +A +   K+I  G I VS+SD+KG ++ E G    +I  +   K + +SL +    Y+     + KY   A+PW      D+A PCA+QNE+   +A  LV SG + + EG+NM  TPEA+ V + A          V   P             LE+ Q    V W+ E  + +L+
Sbjct:  198 LVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQYAALKVIELGGIVVSLSDSKGCIISETGITSEQIHDIASAKIRFKSLEEIVDEYSTFSESKMKYVAGARPWTHVSNVDIALPCATQNEVSGDEAKALVASGVKFVAEGANMGSTPEAISVFETARSTATNAKDAVWFGPPKAANLGGVAVSGLEMAQNSQKVTWTAERVDQELK 405          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_PENCH (NADP-specific glutamate dehydrogenase OS=Penicillium chrysogenum GN=GDH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 64/189 (33.86%), Postives = 99/189 (52.38%), Query Frame = 3
Query:   60 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV---DEDGFDYMKISFLRDIKSQQRSLRDYSKTYARS---KYYDEAKPWNE---RCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLK--------KANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            G R  +SGSG +A +   K+I  G   +S+SD++G LV   +E  F   +I+ + +IK Q++ + + +   A S   KY   A+PW     R DVA P A+QNE+   +A  L+ +GC+ + EGSNM  T EA+DV +         A +  AP             LE+ Q    V+WS E+ +S+L+
Sbjct:  222 GKRVAISGSGNVAQYAALKVIELGGSVISLSDSQGALVLNGEEGSFTAEEINTIAEIKVQRKQIAELATQDAFSSKFKYIPGARPWTNIAGRIDVALPSATQNEVSGDEAKALIAAGCKFIAEGSNMGSTQEAIDVFEAHRDANPGAAAIWYAPGKAANAGGVAVSGLEMAQNSARVNWSREEVDSRLK 410          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE2_CLOSY (NAD-specific glutamate dehydrogenase OS=Clostridium symbiosum GN=gdh PE=1 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 51/190 (26.84%), Postives = 105/190 (55.26%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM-KISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVD-VLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            V++ + ++   N  L G    ++G G +A    +KL   GA  V++S   GY+ D +G     KI+++ ++++  R+ ++DY+  +   +++   KPW ++ D+  PCA+QN++D   A  +V +  +  +E +NMP T EA+  ++++ N+++AP+             E++Q    + W+ E+ +SKL
Sbjct:  215 VYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFG-VQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKL 403          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_SACBA (NADP-specific glutamate dehydrogenase 1 OS=Saccharomyces bayanus GN=GDH1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 64/208 (30.77%), Postives = 101/208 (48.56%), Query Frame = 3
Query:    9 LVFFAQLIL--ADMNKE-LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-----RSKYYDEAKPWN--ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLK---------KANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            LV++ Q ++  A   KE  +G R  +SGSG +A     K+I  G   VS+SD+KG ++ E G    +++ +   K   +SL      Y+     + +Y   A+PW   ++ D+A PCA+QNE+   +A  LV  G + + EGSNM  TPEA+ V +         K +V   P             LE+ Q    + WS E  + +L+
Sbjct:  197 LVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQFAALKVIELGGTVVSLSDSKGCIISETGITSEQVADISSAKVNFKSLEQIVGEYSTFTENKVQYISGARPWTHVQKVDIALPCATQNEVSGDEAKALVAQGVKFVAEGSNMGSTPEAIAVFETARATASTLKESVWYGPPKAANLGGVAVSGLEMAQNSQRITWSSERVDQELK 404          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_YEAST (NADP-specific glutamate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=GDH1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 63/208 (30.29%), Postives = 101/208 (48.56%), Query Frame = 3
Query:    9 LVFFAQLIL--ADMNKE-LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYA-----RSKYYDEAKPWN--ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKAN---------VLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            LV++ Q ++  A   KE  +G R  +SGSG +A +   K+I  G   VS+SD+KG ++ E G    +++ +   K   +SL      Y+     + +Y   A+PW   ++ D+A PCA+QNE+   +A  LV  G + + EGSNM  TPEA+ V + A          V   P             LE+ Q    + W+ E  + +L+
Sbjct:  197 LVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQYAALKVIELGGTVVSLSDSKGCIISETGITSEQVADISSAKVNFKSLEQIVNEYSTFSENKVQYIAGARPWTHVQKVDIALPCATQNEVSGEEAKALVAQGVKFIAEGSNMGSTPEAIAVFETARSTATGPSEAVWYGPPKAANLGGVAVSGLEMAQNSQRITWTSERVDQELK 404          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE2_PORGI (NAD-specific glutamate dehydrogenase OS=Porphyromonas gingivalis GN=gdh PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM-KISFLRDIKSQQRSL-RDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            V+F Q +      + KG    +SG G +A  V +K    G   V++S   GY+ D DG +   K   + D++     +  DY K +  ++++   KPW ++ D A PCA+QNE++  DA  L  +G  ++ E SNM CT EA +      +L AP             LE+ Q    + W+ E+ +  L
Sbjct:  212 VYFVQNMCKQNGVDYKGKTLAISGFGNVAWGVAQKATELGIKVVTISGPDGYVYDPDGINTPEKFRCMLDLRDSGNDVVSDYVKRFPNAQFFPGKKPWEQKVDFAMPCATQNEMNLEDAKTLHKNGVTLVAETSNMGCTAEASEYYVANKMLFAPGKAVNAGGVSCSGLEMTQNAMHLVWTNEEVDKWL 400          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE2_PORG3 (NAD-specific glutamate dehydrogenase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM-KISFLRDIKSQQRSL-RDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            V+F Q +      + KG    +SG G +A  V +K    G   V++S   GY+ D DG +   K   + D++     +  DY K +  ++++   KPW ++ D A PCA+QNE++  DA  L  +G  ++ E SNM CT EA +      +L AP             LE+ Q    + W+ E+ +  L
Sbjct:  212 VYFVQNMCKQNGVDYKGKTLAISGFGNVAWGVAQKATELGIKVVTISGPDGYVYDPDGINTPEKFRCMLDLRDSGNDVVSDYVKRFPNAQFFPGKKPWEQKVDFAMPCATQNEMNLEDAKTLHKNGVTLVAETSNMGCTAEASEYYVANKMLFAPGKAVNAGGVSCSGLEMTQNAMHLVWTNEEVDKWL 400          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_EMENI (NADP-specific glutamate dehydrogenase OS=Emericella nidulans GN=gdhA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 59/188 (31.38%), Postives = 99/188 (52.66%), Query Frame = 3
Query:   60 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDED---GFDYMKISFLRDIKSQQRSLRDYSKTYA---RSKYYDEAKPWNE---RCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL---KKAN----VLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            G R  +SGSG +A +   K+I  G   VS+SD+KG L+ +D    F   +I+ + D+K  ++ L + + + A   +  Y  +A+PW     + +VA P A+QNE+   +A +L+ SG R + EGSNM CT  A+D+    + AN    +  AP             LE+ Q    + W+ E+ +++L+
Sbjct:  221 GKRVAISGSGNVAQYAALKVIELGGSVVSLSDSKGSLIVKDESASFTPEEIALIADLKVARKQLSELATSSAFAGKFTYIPDARPWTNIPGKFEVALPSATQNEVSGEEAEHLIKSGVRYIAEGSNMGCTQAAIDIFEAHRNANPGDAIWYAPGKAANAGGVAVSGLEMAQNSARLSWTSEEVDARLK 408          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_DEBOC (NADP-specific glutamate dehydrogenase OS=Debaryomyces occidentalis GN=GDHA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 62/189 (32.80%), Postives = 97/189 (51.32%), Query Frame = 3
Query:   48 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYAR-------SKYYDEAKPWNE--RCDVAFPCASQNEID-QSDAINLVNSGCRILVEGSNMPCTPEAVDVL---KKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            +  KG R  +SGSG +A +   K+I  G I VS+SD+KG +V ++G    ++  +   K + +SL + +K   +        +Y    +PW +    DVA P A+Q E+  + +A  LV +GC+ + EGSNM  T EA+DV    +  NV  AP             LE+ Q    V WS E+ ++KL+
Sbjct:  219 ESFKGKRVELSGSGNVAQYAALKVIELGGIVVSLSDSKGSIVSKNGIVPEQVLEIAAAKLKFKSLEEITKESVKLFSGENSVEYLAGVRPWAKVGHFDVALPSATQKEVSGEEEAKALVEAGCKYIAEGSNMGSTKEAIDVFEANRSNNVWYAPGKAANCGGVAVSGLEMAQNSQRVQWSAEEVDAKLK 407          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_GIBFU (NADP-specific glutamate dehydrogenase OS=Gibberella fujikuroi GN=GDH2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 62/201 (30.85%), Postives = 106/201 (52.74%), Query Frame = 3
Query:    9 LVFFAQLILADMNK-ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM--KISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNE--RCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVL------KKANVL-IAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            LV++ + +L   N+   +G R  +SGSG +A +   K+I  G   VS+SD+KG LV ++G  +   +I  +  +K + ++L  +     +  + + A+PW    + D+A P A+QNE+ + +A  LV++G  I+ EGSNM CT EA+DV       K A  L  AP             LE+ Q    + W+ ++ + +L+
Sbjct:  201 LVYYVEYMLKHANRGTFEGKRVALSGSGNVAQYAALKIIELGGSVVSLSDSKGALVAKEGSSFTPEQIHNIAALKIKHQALTTFEHD-GQFTWIEGARPWVHVGKVDIALPSATQNEVSKEEAQALVDAGAFIVAEGSNMGCTAEAIDVFEAHRKEKGAEALWYAPGKASNCGGVAVSGLEMAQNSQRIQWTEKEVDDRLK 400          
The following BLAST results are available for this feature:
BLAST of FC877251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHE5_YEAST7.151e-2132.21NADP-specific glutamate dehydrogenase 2 OS=Sacchar... [more]
DHE4_PENCH9.339e-2133.86NADP-specific glutamate dehydrogenase OS=Penicilli... [more]
DHE2_CLOSY7.906e-2026.84NAD-specific glutamate dehydrogenase OS=Clostridiu... [more]
DHE4_SACBA1.033e-1930.77NADP-specific glutamate dehydrogenase 1 OS=Sacchar... [more]
DHE4_YEAST1.349e-1930.29NADP-specific glutamate dehydrogenase 1 OS=Sacchar... [more]
DHE2_PORGI1.349e-1929.63NAD-specific glutamate dehydrogenase OS=Porphyromo... [more]
DHE2_PORG31.349e-1929.63NAD-specific glutamate dehydrogenase OS=Porphyromo... [more]
DHE4_EMENI3.924e-1931.38NADP-specific glutamate dehydrogenase OS=Emericell... [more]
DHE4_DEBOC3.924e-1932.80NADP-specific glutamate dehydrogenase OS=Debaryomy... [more]
DHE4_GIBFU5.125e-1930.85NADP-specific glutamate dehydrogenase OS=Gibberell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BD08RM1 EHR Citrus clementina cDNA clone KN0AAN2BD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877251 ID=FC877251; Name=FC877251; organism=Citrus clementina; type=EST; length=721bp
GCACGAGGCTGGTTTTCTTTGCCCAGCTTATTCTCGCAGACATGAATAAG
GAGCTCAAAGGACTGAGATGTGTTGTAAGTGGTTCTGGAAAGATTGCAAT
GCATGTCCTGGAAAAGCTTATTGCTTATGGTGCTATTCCTGTTTCAGTGT
CAGATGCTAAAGGATATTTGGTGGATGAGGATGGATTTGATTACATGAAA
ATATCATTTTTGAGGGATATCAAATCACAGCAGAGAAGTTTGAGAGACTA
CTCAAAGACATACGCTCGGTCTAAGTACTATGATGAAGCAAAACCTTGGA
ATGAAAGGTGTGATGTTGCATTTCCTTGTGCCTCCCAGAATGAAATAGAT
CAGTCTGATGCCATTAATTTGGTTAATTCAGGTTGTCGTATACTTGTAGA
AGGTTCAAATATGCCATGTACACCTGAAGCAGTTGATGTTCTGAAAAAAG
CTAATGTTCTCATAGCCCCTGCAATGGCTGCTGGTGCTGGAGGGGTTGTT
GCAGGAGAACTTGAACTAAACCAGGAGTGCAATATGGTGCACTGGTCGCC
CGAGGACTTTGAATCTAAATTACAAGTATGACACCCAATACTTCAAATCT
TGCTCTCAAATAGCTTAATCTTGAATGCAAATAGCTTCAAGCTTTTCTTT
CCTTTTCCTTTTCATTCGAGCTGAGAACGACATANCTGAAAGCATTAGTT
GTAACTATTAGCTGTCTTAAT
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