FC877256

Overview
NameFC877256
Unique NameFC877256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10367 contig Ccv1_Contig10367:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 436
            Y+G+R R WGKWVAEIR P  R+R+WLG++ T   AA AYD A + LRG  ARLNFP L
Sbjct:  152 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL 210          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQED 451
            Y+GIR R WGKW AEIR+P+K  R+WLG++ T   AARAYD A   +RG  A+LNFP    +E+
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEEE 113          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            Y+G+R R WGKWVAEIREPN+  R+WLGS+ T + AA AYD A   + GP+AR+NF +
Sbjct:   76 YRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNFAD 133          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            Y+G+R R WGKWVAEIREPN+  R+WLGS+ T + AA AYD A   + GP+AR+NF +
Sbjct:   76 YRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNFAD 133          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: ERF19_ARATH (Ethylene-responsive transcription factor ERF019 OS=Arabidopsis thaliana GN=ERF019 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSA--RLNFPELIFQEDDLRDVSAASIRKKATEVGAKVDA 520
            YKGIR RKWGKWV+EIR P  R R+WLGS++T   AA A+D A F L  P +   LNFP L+     +   S  SI++ A+  G  +DA
Sbjct:   14 YKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCLHQPDSLESLNFPHLL-NPSLVSRTSPRSIQQAASNAGMAIDA 101          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEV 502
            ++G+R R WGKWVAEIREPN+ SR+WLG++ T   AA AYD A   + GP ARLNFP       D  +V++ S + +   V
Sbjct:   79 FRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFP-----RSDASEVTSTSSQSEVCTV 154          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP---ELIFQEDDLRDVSAASIRKKATEVGAKV 514
            Y+G+R R WGKWV+EIR P    RIWLGSY  P  AARAYD A+F +RG     NFP   +    E  +R +S   I+  AT   + V
Sbjct:   27 YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSKLDIQTIATNYASSV 114          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            Y+G+R R WGKW AEIR+P K +R+WLG++ T  AAA AYD A    +G  A+LNFPE
Sbjct:   92 YRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPE 149          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAKVDA 520
            Y+G+R R WGK+ AEIR+P + +R+WLG++ T   AARAYD A    RGP A+LNFP + +        S+ S    A ++GAK  A
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDY-------TSSVSSPVAADDIGAKASA 215          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRK 487
            Y+GIR R WGKW AEIR+P + +RIWLG++ T   AARAYD A   +RG  A++NFPE   + +  +    A+++K
Sbjct:  125 YRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQK 200          
The following BLAST results are available for this feature:
BLAST of FC877256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RAP24_ARATH8.907e-1561.02Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF71_ARATH8.907e-1554.69Ethylene-responsive transcription factor ERF071 OS... [more]
DRE2A_ORYSJ8.907e-1558.62Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI8.907e-1558.62Dehydration-responsive element-binding protein 2A ... [more]
ERF19_ARATH1.163e-1448.31Ethylene-responsive transcription factor ERF019 OS... [more]
DRE2A_ARATH1.519e-1448.15Dehydration-responsive element-binding protein 2A ... [more]
ERF15_ARATH1.984e-1446.59Ethylene-responsive transcription factor ERF015 OS... [more]
EF115_ARATH1.984e-1456.90Ethylene-responsive transcription factor ERF115 OS... [more]
EF109_ARATH1.984e-1444.83Ethylene-responsive transcription factor ERF109 OS... [more]
RA212_ARATH2.591e-1447.37Ethylene-responsive transcription factor RAP2-12 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BE01RM1 EHR Citrus clementina cDNA clone KN0AAN2BE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877256 ID=FC877256; Name=FC877256; organism=Citrus clementina; type=EST; length=786bp
GCACGAGGCGGCACGAGGCACATATATAAGTGACTTGTACAGCATCTGCG
GCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCGGTATG
TGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATCTACGA
AAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAACGAAAA
GCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGCAGCAG
GAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTCGC
TGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTCTTACA
CCACGCCTATAGCCGCCGCACGTGCCTACGACACGGCCGTCTTCTATCTC
CGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAAGAAGA
CGATCTTCGAGACGTTTCTGCCGCTTCAATACGCAAGAAAGCTACCGAAG
TTGGCGCTAAGGTCGACGCTTTACAAGCTGCTCTCCATGCTGCTAATTCA
GAATCTGAATCCAATTCCAATTCCAATTTCAATTCTATTCGATTGTCCGA
GAAGCCTGATTTAAACAAGTTTCCAGAGAGTTCTGATGAAGATTGATAAC
ACAAAATACTTGCAAGCTCACAATTACCTACCCTAGCCTTTCCACGTTTA
CGTACTGTTTTATTCCCATCATCAGTTTCAACTTTGAAAACGTACGGAAT
CACAAGGATTCTGTTTCATATATTTATATTATATAT
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