FC877256

Overview
NameFC877256
Unique NameFC877256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10367 contig Ccv1_Contig10367:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 439
            Y+G+R R WGK+ AEIR+P K  +R+WLG+Y TP  AA AYD A F LRG  A+LNFP LI
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLI 152          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WG++ AEIR+P K+SR+WLG++ + + AARAYDTA   LRGP A+ NFP
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 436
            Y+G+R R WGKWVAEIREP KR+R+WLGS+ T   AA AYD A   L G  A LN P L
Sbjct:   28 YRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLPHL 86          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATE 499
            Y+G+R R  GKWV+E+REPNK++RIWLG++ T   AARA+D A   LRG SA LNF +  ++        A  I+K A E
Sbjct:   48 YRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAE 127          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            Y+GIR R WGKW AEIR+P K SR WLG++ T   AARAYD A   +RG  A++NFPE
Sbjct:  128 YRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPE 185          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 436
            Y+GIR R WGKW AEIR+P K  R+WLG++ T   AA AYD A   +RG  A+LNFP+L
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDL 137          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 439
            Y+G+R R WGKW AEIR+P K +R+WLG++ T  +AA AYD A    +G  A+LNFPE +
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERV 149          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRS-RIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRD 463
            Y+G+R R WGK+ AEIR+PNK+  R+WLG++ T + AAR YD A F LRG  A LNFP    + +DL D
Sbjct:   72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGD 140          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRS-RIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WGK+ AEIR+PNK+  RIWLG+Y T + A RAYD A F LRG  A LNFP
Sbjct:   88 YRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of FC877256 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATE 499
            Y+G+R R  GKWV E+REPNK++RIWLG++ T   AARA+D A   LRG SA LNF +  ++        A  I+K A E
Sbjct:   51 YRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAE 130          
The following BLAST results are available for this feature:
BLAST of FC877256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ERF99_ARATH2.591e-1460.66Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF83_ARATH2.591e-1457.89Ethylene-responsive transcription factor 7 OS=Arab... [more]
DRE2F_ARATH2.591e-1461.02Dehydration-responsive element-binding protein 2F ... [more]
DRE1B_ARATH2.591e-1448.75Dehydration-responsive element-binding protein 1B ... [more]
RAP22_ARATH3.384e-1460.34Ethylene-responsive transcription factor RAP2-2 OS... [more]
RAP23_ARATH4.420e-1457.63Ethylene-responsive transcription factor RAP2-3 OS... [more]
EF114_ARATH4.420e-1453.33Ethylene-responsive transcription factor ERF114 OS... [more]
EF105_ARATH4.420e-1453.62Ethylene-responsive transcription factor ERF105 OS... [more]
EF104_ARATH4.420e-1462.07Ethylene-responsive transcription factor ERF104 OS... [more]
DRE1C_ARATH4.420e-1448.75Dehydration-responsive element-binding protein 1C ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BE01RM1 EHR Citrus clementina cDNA clone KN0AAN2BE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877256 ID=FC877256; Name=FC877256; organism=Citrus clementina; type=EST; length=786bp
GCACGAGGCGGCACGAGGCACATATATAAGTGACTTGTACAGCATCTGCG
GCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCGGTATG
TGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATCTACGA
AAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAACGAAAA
GCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGCAGCAG
GAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTCGC
TGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTCTTACA
CCACGCCTATAGCCGCCGCACGTGCCTACGACACGGCCGTCTTCTATCTC
CGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAAGAAGA
CGATCTTCGAGACGTTTCTGCCGCTTCAATACGCAAGAAAGCTACCGAAG
TTGGCGCTAAGGTCGACGCTTTACAAGCTGCTCTCCATGCTGCTAATTCA
GAATCTGAATCCAATTCCAATTCCAATTTCAATTCTATTCGATTGTCCGA
GAAGCCTGATTTAAACAAGTTTCCAGAGAGTTCTGATGAAGATTGATAAC
ACAAAATACTTGCAAGCTCACAATTACCTACCCTAGCCTTTCCACGTTTA
CGTACTGTTTTATTCCCATCATCAGTTTCAACTTTGAAAACGTACGGAAT
CACAAGGATTCTGTTTCATATATTTATATTATATAT
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