FC877257

Overview
NameFC877257
Unique NameFC877257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:772..1589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SC61A_YARLI (Protein transport protein SEC61 subunit alpha OS=Yarrowia lipolytica GN=SEC61 PE=3 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 2.167e-75
Identity = 137/254 (53.94%), Postives = 182/254 (71.65%), Query Frame = 1
Query:   10 FEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 771
            FEGA++A  HLL T+++K  A+ EAF RQ+LPN++ L+ TV +F  V+Y QGF+V +PV+S   RG  G +PIKLFYTSN+PI+LQSAL SN++ ISQ+L++K+  N  V LLG W   E      PV G+AYY+  P +  +  A+P   + Y+ F+L  CA+FS TWIE+SGSS RDVAKQ KEQ +V+ G R+++  KEL R IPTAAAFGG  IGAL+V +D +GA+ SGTGIL+AVT IY Y+E   KE
Sbjct:  211 FEGAIVAFVHLLFTRKDKKRAIIEAFTRQDLPNMSQLVTTVAIFAAVIYLQGFRVDIPVKSSKQRGPYGVFPIKLFYTSNLPIMLQSALTSNIFIISQMLFKKFPTNVLVRLLGVWDGREGMQQLFPVSGIAYYMQPPFNAKEALADPVKTVIYIAFVLGVCAVFSATWIEISGSSPRDVAKQFKEQGLVIAGRRETSAYKELKRIIPTAAAFGGATIGALSVASDLLGALSSGTGILMAVTTIYGYYEMAAKE 464          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SC61A_ASHGO (Protein transport protein SEC61 subunit alpha OS=Ashbya gossypii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.835e-74
Identity = 140/257 (54.47%), Postives = 187/257 (72.76%), Query Frame = 1
Query:   10 FEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKW---KESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 771
            FEGAV+ALFHLL  +++K  AL EAFYR  LPN+  +L+TV VFL V+Y QGF+  LPVRS   RGQ G+YPIKLFYTSN PI+LQSAL SN++  SQLLY+K+  N  V +LG W    ++ YS ++  + GL+YY+  P S  +   +P   + Y+ F+L ACA+FS+TWI+VSG+S RDV+KQ KEQ +V+ G R++++ +EL + IPTAAAFGG  IGAL+V +D +G +GSGT IL+A T IY Y+ET  KE
Sbjct:  210 FEGAVVALFHLLSVRKDKKRALVEAFYRDYLPNMFQVLSTVFVFLFVLYLQGFRYELPVRSTRTRGQVGSYPIKLFYTSNTPIMLQSALTSNIFLTSQLLYQKFPNNPIVKMLGVWGTRSDAPYSPNA-AISGLSYYIQPPFSFTEALLDPIKTVVYVTFVLGACAMFSRTWIDVSGTSPRDVSKQFKEQGLVINGRRETSVYRELKKVIPTAAAFGGATIGALSVGSDLLGTLGSGTSILMATTTIYGYYETAAKE 465          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SC61A_CANGA (Protein transport protein SEC61 subunit alpha OS=Candida glabrata GN=SEC61 PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.396e-74
Identity = 141/255 (55.29%), Postives = 181/255 (70.98%), Query Frame = 1
Query:   10 FEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWK-ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 771
            FEGAVIA FHLL  +++K  AL EAFYR+NLPN+  ++ATV VFL V+Y QGF+  LPV+S   RGQ   YPIKLFYTSN PI+LQSAL SN++ ISQ+L++KY  N  + L G W      +G  +P+ G++YY+    SL     +P   + Y  F+L  CALFSKTWIE+SG+SA+DVAKQ KEQ MV+ G R++++ KEL + IPTAAAFGG  IGAL+V +D +GA+GSG  ILLA T IY Y+E   KE
Sbjct:  210 FEGAVIAFFHLLAVRKDKKRALVEAFYRENLPNMFQVIATVFVFLFVLYLQGFRYELPVKSTKVRGQMAIYPIKLFYTSNTPIMLQSALSSNIFLISQILFQKYPSNPVIRLFGVWGIRPGTNGPQVPLSGISYYLQPIGSLKMALLDPIKTVIYTAFVLGTCALFSKTWIEISGTSAKDVAKQFKEQGMVINGKRETSVYKELKKIIPTAAAFGGATIGALSVGSDLLGALGSGASILLATTTIYGYYEVAAKE 464          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SC61A_YEAST (Protein transport protein SEC61 OS=Saccharomyces cerevisiae GN=SEC61 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.519e-73
Identity = 136/255 (53.33%), Postives = 181/255 (70.98%), Query Frame = 1
Query:   10 FEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWK-ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 771
            FEGAVIA FHLL  +++K  AL EAFYR NLPN+  +L TV +FL V+Y QGF+  LP+RS   RGQ G YPIKLFYTSN PI+LQSAL SN++ ISQ+L++KY  N  + L+G W       G  + + GLAYY+    SL++   +P   + Y+ F+L +CA+FSKTWIE+SG+S RD+AKQ K+Q MV+ G R++++ +EL + IPTAAAFGG  IGAL+V +D +G +GSG  IL+A T IY Y+E   KE
Sbjct:  211 FEGAVIAFFHLLAVRKDKKRALVEAFYRTNLPNMFQVLMTVAIFLFVLYLQGFRYELPIRSTKVRGQIGIYPIKLFYTSNTPIMLQSALTSNIFLISQILFQKYPTNPLIRLIGVWGIRPGTQGPQMALSGLAYYIQPLMSLSEALLDPIKTIVYITFVLGSCAVFSKTWIEISGTSPRDIAKQFKDQGMVINGKRETSIYRELKKIIPTAAAFGGATIGALSVGSDLLGTLGSGASILMATTTIYGYYEAAAKE 465          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SC61A_SCHPO (Protein transport protein sec61 subunit alpha OS=Schizosaccharomyces pombe GN=sec61 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.480e-71
Identity = 134/261 (51.34%), Postives = 177/261 (67.82%), Query Frame = 1
Query:   10 FEGAVIALFHLLITKQNKVGALREAFYRQNL-------PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 771
            FEGAVI   +++ T  NK  AL +AF+R  L       PN+ N  AT+LVF +V+Y Q F+V +P+RS+  RG +  +P+KL YTSN PI+LQSAL SNL+F S+LL+ ++S NF V  LG W+++  SG       L+YY++ PAS  D   +P H L Y+ F + ACALFSK WIEVSG+S RDVAKQLK QQ+VM GHR+ ++ KEL R IPTAA   G  +GAL V +D +GA+GSGT +LL  T IY Y+E  +KE
Sbjct:  211 FEGAVINFVYVMFTWDNKAAALYQAFFRSGLTSSQIQLPNLWNFFATLLVFGVVIYLQDFRVEIPIRSQKFRGYRSTFPVKLLYTSNTPIMLQSALTSNLFFASRLLFNRFSSNFLVRFLGVWEQTATSG-------LSYYLSPPASFQDALIDPIHTLVYVFFTMFACALFSKLWIEVSGASPRDVAKQLKSQQLVMAGHREGSMYKELKRIIPTAAWLSGAVVGALAVASDLLGALGSGTAVLLCTTTIYGYYEQLQKE 464          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SECY_METVA (Preprotein translocase subunit secY OS=Methanococcus vannielii GN=secY PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.511e-39
Identity = 93/264 (35.23%), Postives = 144/264 (54.55%), Query Frame = 1
Query:    1 ARGFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 786
            A G EG +   F  +      VG+L  AF       I  +L+T+ VFL+VVY +  +V +P+     +G  G YPIK  Y SN+P+IL +AL +N+               F++ +G     +YS +   V G+AYY + P  ++++ ++P HA+FY + M+  C LF   W+E SG  A+ +AK+L    M + G R S  ++++ L RYI      G   +G L   ADF GA+G GTG+LL V+I+Y+ +E   +E+ SEL
Sbjct:  185 AFGAEGYLWKFFSAM-----SVGSLGIAF-----EYILPILSTLFVFLVVVYVESIRVEIPLAHGRVKGAVGKYPIKFIYVSNLPVILAAALFANIQL----------WGMFLDRMGYPILGQYS-NGTAVSGIAYYFSTPYGISNIISDPLHAIFYTLMMVIFCILFGLFWVETSGLDAKSMAKKLGNLDMAIKGFRKSQKSIEQRLKRYIKPITVMGSAFVGFLAAAADFTGALGGGTGVLLTVSIVYRLYEQLVQEQLSEL 427          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SECY_PYRAB (Preprotein translocase subunit secY OS=Pyrococcus abyssi GN=secY PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.720e-38
Identity = 88/243 (36.21%), Postives = 141/243 (58.02%), Query Frame = 1
Query:   67 GALREAFYRQNL-PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 786
            G L+ A YR    P++  ++AT++VFL+VVYF+  +V +P+  +     +G YPI+  Y SN+PIIL  AL +N+   +++L R         L   W  +       PVGG   YV  P S+  +  NP  AL YL+  + +  +F   W+E++G  AR +A+QL+   + +PG R     L++ L +YIP    +G + +  + VLADF+GA+G+GTGILL V I+Y+++E   +E+ SE+
Sbjct:  226 GDLKGALYRGGTAPDMMAVIATIIVFLVVVYFESMRVEIPLGYRGVT-IRGRYPIRFLYVSNIPIILTFALYANIQLWARVLDR---------LGHPWLGTFDPTTGNPVGGFVLYVIPPRSIFTVIDNPVRALVYLILTVISSLIFGFLWVELTGLDARTIARQLQRAGLQIPGFRRDPRTLERVLQKYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQISEM 458          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SECY_METJA (Preprotein translocase subunit secY OS=Methanocaldococcus jannaschii GN=secY PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.052e-37
Identity = 79/232 (34.05%), Postives = 132/232 (56.90%), Query Frame = 1
Query:   97 NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 786
            N+  I  ++ T++VFL+VVY +  +V +P+     +G  G YPIK  Y SN+P+IL +AL +N+      LYR       + +LG ++          V G+AYY++ P  L+ + ++P HA+ Y++ M+  C +F   W+E +G   + +AK++    M + G R S   ++  L RYIP         +G L  +A+F+GA+G GTG+LL V+I+Y+ +E   +E+ SEL
Sbjct:  206 NIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYR-----MGIPILGHYEGGR------AVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLREKVSEL 426          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SECY_PYRHO (Preprotein translocase subunit secY OS=Pyrococcus horikoshii GN=secY PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.373e-37
Identity = 88/243 (36.21%), Postives = 146/243 (60.08%), Query Frame = 1
Query:   67 GALREAFYRQ-NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 786
            G L+ A YR  + P++  + AT++VFL+VVYF+  +V +P+  +     +G YPIK  Y SN+PIIL  AL +N+   +++L R     F    LG++     +G+  P+GG   YV  P ++  +  NP  A+ YL+  +    LF   W+E++G  AR +A+QL+   + +PG R     L++ L +YIP    +G + +  ++VLADF+GA+G+GTGILL V I+Y+++E   +E+ +E+
Sbjct:  226 GDLKGALYRGGSAPDMIAVTATIIVFLVVVYFESMRVEIPLGYRGVT-IRGRYPIKFLYVSNIPIILTFALYANIQLWARVLDR-----FGHPWLGRF--DPVTGN--PIGGFVLYVIPPRNIFTVIDNPVRAIIYLILTIIFSLLFGFLWVELTGLDARTIARQLQRAGLQIPGFRRDPRTLERVLQKYIPYVTFWGSLTVALISVLADFLGALGTGTGILLTVGILYRFYEEIAREQITEM 458          
BLAST of FC877257 vs. ExPASy Swiss-Prot
Match: SECY_PYRFU (Preprotein translocase subunit secY OS=Pyrococcus furiosus GN=secY PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.219e-37
Identity = 88/243 (36.21%), Postives = 146/243 (60.08%), Query Frame = 1
Query:   67 GALREAFYRQ-NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 786
            G L  A YR  + P++ +++AT++VF IVVYF+  +V +P+  +     +G+YPI+  Y SN+PIIL  AL +N+   +++L R   G+ +   LG++  +  S    P+ G   YV  P ++  +  NP  A+ YL+  +    LF   W+E++G  AR +A+QL+   + +PG R     L+K L RYIP    +G + +  + VLADF+GA+G+GTGILL V I+Y+++E   +E+ +E+
Sbjct:  226 GDLWGAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRL--GHPW---LGRFDPTTGS----PISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITEM 458          
The following BLAST results are available for this feature:
BLAST of FC877257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_YARLI2.167e-7553.94Protein transport protein SEC61 subunit alpha OS=Y... [more]
SC61A_ASHGO1.835e-7454.47Protein transport protein SEC61 subunit alpha OS=A... [more]
SC61A_CANGA2.396e-7455.29Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_YEAST4.519e-7353.33Protein transport protein SEC61 OS=Saccharomyces c... [more]
SC61A_SCHPO2.480e-7151.34Protein transport protein sec61 subunit alpha OS=S... [more]
SECY_METVA9.511e-3935.23Preprotein translocase subunit secY OS=Methanococc... [more]
SECY_PYRAB4.720e-3836.21Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_METJA1.052e-3734.05Preprotein translocase subunit secY OS=Methanocald... [more]
SECY_PYRHO1.373e-3736.21Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_PYRFU5.219e-3736.21Preprotein translocase subunit secY OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BE03RM1 EHR Citrus clementina cDNA clone KN0AAN2BE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877257 ID=FC877257; Name=FC877257; organism=Citrus clementina; type=EST; length=818bp
GCACGAGGATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAAC
CAAGCAAAACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACC
TTCCCAATATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTT
GTCTACTTTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGC
CCGTGGGCAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACA
TGCCTATCATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCT
CAGTTGCTCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGG
GAAGTGGAAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCC
TAGCTTATTATGTCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAAT
CCTTTCCATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCT
TTTCTCGAAAACTTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGG
CCAAGCAGCTTAAGGAGCAACAAATGGTGATGCCTGGACATAGAGACTCA
AATCTTCAAAAGGAACTGAACCGGTACATACCAACTGCTGCTGCCTTTGG
TGGAGTGTGCATTGGTGCATTAACAGTCCTGGCTGATTTCATGGGAGCAA
TTGGGTCAGGAACTGGGATATTGCTCGCAGTTACGATCATATATCAGTAC
TTTGAGACGTTTGAGAAGGAGAGAGCTAGTGAACTTGGCTTCTTTGGCTT
TTATACCCCAATGATCTT
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