FC877264

Overview
NameFC877264
Unique NameFC877264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 41/141 (29.08%), Postives = 77/141 (54.61%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWAL 424
            LQ++V+++  Y    T  +D +                  C  L+++V  F ++++  LDA+C+ + P+  T+ T++IREGDP++EM+F+++G++ + T +  +SG  +S               L+ GDF G+EL+ WAL
Sbjct:  408 LQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNS-------------ITLRPGDFCGEELLTWAL 535          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 42/141 (29.79%), Postives = 75/141 (53.19%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWAL 424
            L+ +V++Y+ Y    T  +D +                  C +L+++V  F ++++  LDA+C+ +  +  TE T+L+REGD I EM+F+++G+L + T N  ++G  +S               L+ GDF G+EL+ WAL
Sbjct:  432 LRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNS-------------IILRPGDFCGEELLSWAL 559          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 9.009e-13
Identity = 39/141 (27.66%), Postives = 75/141 (53.19%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWAL 424
            L+++V+++  Y    T  +D +                  C +L+++V  F ++++  LDA+C+ +  +  T+  +++REGDP+ EM+F+++GKL + T N  ++G  +S               L+ GDF G+EL+ WAL
Sbjct:  432 LRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNS-------------ITLRPGDFCGEELLAWAL 559          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12
Identity = 43/146 (29.45%), Postives = 78/146 (53.42%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPFS 439
            L+++++KY+ Y  ++T  ++ +                  C  LLKKV  F+ +++  LDALC  +K   +TE ++++REG+P+++M+F+++G L + T    ++G  +S               L  GDF G +L+ WAL DP S
Sbjct:  428 LRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVD-------------LVAGDFCG-DLLTWAL-DPLS 558          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  122 CWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPF 436
            C++L+ KV  FR ++++ LD +CD  KP  F++   +IREGDP+  MIF+++G+++      IQS S          K       L+ G + G EL+ W LR PF
Sbjct:  522 CFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKR-----IQSLS----------KGVLATSTLEPGGYLGDELLSWCLRRPF 611          
The following BLAST results are available for this feature:
BLAST of FC877264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CNG16_ARATH1.390e-1329.08Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG17_ARATH3.096e-1329.79Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNG14_ARATH9.009e-1327.66Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNGC3_ARATH2.621e-1229.45Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNGC2_ARATH2.621e-1236.19Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BE12RM1 EHR Citrus clementina cDNA clone KN0AAN2BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877264 ID=FC877264; Name=FC877264; organism=Citrus clementina; type=EST; length=440bp
TCTCCAGCAAAAGGTGAAGAAATATAAGTCATACATACGGCGAAAAACTG
ATTACATTGATGTACAAAATCTACTCAATAATCTTCCCAATGAACTCAGA
AGAGAACTAAAGCGCGAACTTTGCTGGAATCTGCTAAAGAAAGTACAAGG
GTTCAGGAAGCTAAATGAAGTAACATTGGATGCTCTATGCGATTGCGTAA
AACCAACTTTCTTCACCGAGCACACTCACTTGATTCGTGAAGGAGACCCA
ATTGACGAGATGATCTTTGTAGTGCAAGGCAAACTGCGCACCTACACCTT
TAACGATATACAAAGTGGCTCAACAAGCTCTGATCATAAAAGATATGATG
GCAAAAACACCAGGAAAGAAGATTTTCTGCAAGATGGCGACTTCTATGGA
AAAGAACTTATTGTCTGGGCTTTGAGAGACCCCTTCTCAT
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