FC877264
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13 Identity = 41/141 (29.08%), Postives = 77/141 (54.61%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWAL 424 LQ++V+++ Y T +D + C L+++V F ++++ LDA+C+ + P+ T+ T++IREGDP++EM+F+++G++ + T + +SG +S L+ GDF G+EL+ WAL Sbjct: 408 LQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNS-------------ITLRPGDFCGEELLTWAL 535
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13 Identity = 42/141 (29.79%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWAL 424 L+ +V++Y+ Y T +D + C +L+++V F ++++ LDA+C+ + + TE T+L+REGD I EM+F+++G+L + T N ++G +S L+ GDF G+EL+ WAL Sbjct: 432 LRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNS-------------IILRPGDFCGEELLSWAL 559
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 9.009e-13 Identity = 39/141 (27.66%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWAL 424 L+++V+++ Y T +D + C +L+++V F ++++ LDA+C+ + + T+ +++REGDP+ EM+F+++GKL + T N ++G +S L+ GDF G+EL+ WAL Sbjct: 432 LRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNS-------------ITLRPGDFCGEELLAWAL 559
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12 Identity = 43/146 (29.45%), Postives = 78/146 (53.42%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPFS 439 L+++++KY+ Y ++T ++ + C LLKKV F+ +++ LDALC +K +TE ++++REG+P+++M+F+++G L + T ++G +S L GDF G +L+ WAL DP S Sbjct: 428 LRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVD-------------LVAGDFCG-DLLTWAL-DPLS 558
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12 Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 2 Query: 122 CWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPF 436 C++L+ KV FR ++++ LD +CD KP F++ +IREGDP+ MIF+++G+++ IQS S K L+ G + G EL+ W LR PF Sbjct: 522 CFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKR-----IQSLS----------KGVLATSTLEPGGYLGDELLSWCLRRPF 611 The following BLAST results are available for this feature:
BLAST of FC877264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877264 ID=FC877264; Name=FC877264; organism=Citrus clementina; type=EST; length=440bpback to top |