FC877265

Overview
NameFC877265
Unique NameFC877265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length373
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10417 contig Ccv1_Contig10417:6..378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877265 vs. ExPASy Swiss-Prot
Match: ZC3HF_DANRE (Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13
Identity = 47/119 (39.50%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYV-----------QNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKXGQC 370
            MPPK+ +      K +  KK+KI+EDKTFGLKNK  +K  QK++           QN +Q    + +++K                LN+LFK  V+  KV  GVDPKS+LC F+K GQC
Sbjct:    1 MPPKKPAPAAANKKTQEKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTK-----KKDDKKKELSELNELFKPVVAAQKVSKGVDPKSVLCAFFKQGQC 113          
BLAST of FC877265 vs. ExPASy Swiss-Prot
Match: ZC3HF_CHICK (Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.540e-13
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 2
Query:   65 MPPKQQS-------KAELAKKQKIVEDKTFGLKNKNKSKNVQ--KYVQNLKQNVQPKPDQS---KVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKXGQC 370
            MPPK+Q        KA+  KK+KI+EDKTFGLKNK  +K  +  K V +L +  Q  P Q+   +                LN+LFK  V+  K+  G DPKS++C F+K GQC
Sbjct:    1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQQKFFKAVTHLVKFGQQYPRQAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQC 114          
BLAST of FC877265 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROME (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.294e-12
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 2
Query:   62 KMPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQ-----PKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKXGQC 370
            K PP    K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ     P+ D  K                L  +FK  V   KV  G DPKS++C F+K G C
Sbjct:    5 KAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQSGGQHPRQDGDKRKEEKEKKLAEQREMAL--IFK-PVQTQKVEKGTDPKSVVCAFFKQGTC 108          
BLAST of FC877265 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEEL (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 2
Query:   65 MPPKQQS---KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKXGQC 370
            MPPKQQ    K+E  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C
Sbjct:    1 MPPKQQGPSKKSEQKRKEKVIEDKTFGLKNKKGNKN-QKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDELLDIANLLKPVEQKVAKDVDPKSLLCVFFKQGLC 104          
BLAST of FC877265 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROPS (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.487e-11
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 2
Query:   65 MPPKQ-----QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQP---KPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKXGQC 370
            MPPK+       K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ     P Q                  +  +FK  V   KV  G DPKS++C F+K G C
Sbjct:    1 MPPKKAPAGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQAGGHHPRQDGDKKKDEKEKKLADLREMASIFK-PVQTQKVDKGTDPKSVVCAFFKQGLC 108          
BLAST of FC877265 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEBR (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 2
Query:   65 MPPKQ--QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKXGQC 370
            MPPKQ    KAE  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C
Sbjct:    1 MPPKQAPSKKAENKRKEKVIEDKTFGLKNKKGNKN-QKFVAQIENQVRNNNTRMDLVRQQEAAKKKEKDELLDIQNLLKPVEQKVAKDVDPKSLLCVFFKQGLC 103          
The following BLAST results are available for this feature:
BLAST of FC877265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ZC3HF_DANRE2.075e-1339.50Zinc finger CCCH domain-containing protein 15 OS=D... [more]
ZC3HF_CHICK3.540e-1340.35Zinc finger CCCH domain-containing protein 15 OS=G... [more]
ZC3HF_DROME2.294e-1239.81Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEEL1.139e-1138.10Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROPS1.487e-1138.18Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEBR1.942e-1138.46Zinc finger CCCH domain-containing protein 15 homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BF01RM1 EHR Citrus clementina cDNA clone KN0AAN2BF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877265 ID=FC877265; Name=FC877265; organism=Citrus clementina; type=EST; length=373bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAANCGGGACAGTGTCAG
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