FC877267

Overview
NameFC877267
Unique NameFC877267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_STRA3 (ATP synthase subunit beta OS=Streptococcus agalactiae serotype III GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_STRA1 (ATP synthase subunit beta OS=Streptococcus agalactiae serotype Ia GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI+        K A+V+GQMNEPPGAR RV LTGLT+AE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIE--------KTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 283          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_STIHE (ATP synthase subunit beta, chloroplastic OS=Stigeoclonium helveticum GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ESGVI   +  ++SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLAT++GG
Sbjct:  209 ESGVINESNL-SESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGG 299          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_PELHO (ATP synthase subunit beta, chloroplastic OS=Pelargonium hortorum GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI    K A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  218 ESGVIN-EQKVAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 307          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_NOSP7 (ATP synthase subunit beta OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +   +SK ALVYGQMNEPPGAR RVGL+GLTVAE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL TD+G
Sbjct:  208 ESGVIN-NENLNESKIALVYGQMNEPPGARMRVGLSGLTVAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVG 297          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_NEPOL (ATP synthase subunit beta, chloroplastic OS=Nephroselmis olivacea GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ES VI   D ++ SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLAT++GG
Sbjct:  209 ESKVINKADVKS-SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNNQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGG 299          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_FUSNN (ATP synthase subunit beta OS=Fusobacterium nucleatum subsp. nucleatum GN=atpD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI        +K ALVYGQMNEPPGAR RV LTGLTVAE+FRD +GQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQP LAT++G
Sbjct:  195 ESGVI--------TKTALVYGQMNEPPGARLRVALTGLTVAENFRDKDGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPNLATEMG 277          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_CUSSA (ATP synthase subunit beta, plastid OS=Cuscuta sandwichiana GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI    K A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  215 ESGVINQ-QKLAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNRQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 304          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_CUSPE (ATP synthase subunit beta, plastid OS=Cuscuta pentagona GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI    K A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  215 ESGVINQ-QKLAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNRQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 304          
BLAST of FC877267 vs. ExPASy Swiss-Prot
Match: ATPB_CUSOB (ATP synthase subunit beta, plastid OS=Cuscuta obtusiflora GN=atpB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.016e-32
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI    K A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTL+T++G
Sbjct:  215 ESGVINQ-QKLAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNRQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMG 304          
The following BLAST results are available for this feature:
BLAST of FC877267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_STRA32.016e-3276.92ATP synthase subunit beta OS=Streptococcus agalact... [more]
ATPB_STRA12.016e-3276.92ATP synthase subunit beta OS=Streptococcus agalact... [more]
ATPB_STIHE2.016e-3277.17ATP synthase subunit beta, chloroplastic OS=Stigeo... [more]
ATPB_PELHO2.016e-3278.02ATP synthase subunit beta, chloroplastic OS=Pelarg... [more]
ATPB_NOSP72.016e-3278.02ATP synthase subunit beta OS=Nostoc punctiforme (s... [more]
ATPB_NEPOL2.016e-3277.17ATP synthase subunit beta, chloroplastic OS=Nephro... [more]
ATPB_FUSNN2.016e-3279.12ATP synthase subunit beta OS=Fusobacterium nucleat... [more]
ATPB_CUSSA2.016e-3278.02ATP synthase subunit beta, plastid OS=Cuscuta sand... [more]
ATPB_CUSPE2.016e-3278.02ATP synthase subunit beta, plastid OS=Cuscuta pent... [more]
ATPB_CUSOB2.016e-3278.02ATP synthase subunit beta, plastid OS=Cuscuta obtu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BF03RM1 EHR Citrus clementina cDNA clone KN0AAN2BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877267 ID=FC877267; Name=FC877267; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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