FC877271

Overview
NameFC877271
Unique NameFC877271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  302 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTA 598
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGI+  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  302 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTA 598
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGI+  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  347 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 574
            ++G  V+++F A WCGPCR I P+  E +K++ G +   KV+ DE   +A +Y + ++PT +  K+G + D V+GA
Sbjct:   26 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA 100          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  347 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 574
            ++G  V+++F A WCGPCR I P+  E +K++ G +   KV+ DE   +A +Y + ++PT +  K+G + D V+GA
Sbjct:   26 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA 100          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  302 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTA 598
            +V  +TD ++   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGIR  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  302 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTA 598
            +V  +TD ++   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGIR  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  284 AQETAVEVPAVTDATWQSLVL---DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            A E    +   T  TW   +    +S + V+V+F A WCGPCR I P   +L+K+    L   KV+TDE  S+A+ + I+++PT M  K G+  D V+GA  K  L ++I K L
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL-FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL 113          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 2
Query:  347 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 574
            D+   ++++F+A WCGPCRMI PI ++ S +Y G     KVN D +  I  RY I ++PT +  KN ++ D V GA
Sbjct:   20 DANRLIIIDFFANWCGPCRMISPIFEQFSAEY-GNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGA 94          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  329 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKS 586
            W S +  SG  + V+ +A WCGPC+ I P+  +L+ +Y   K    KVN DE   IA+  G++++PT + F+NG++ D + GA P++
Sbjct:   12 WISTIPKSGY-LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQA 97          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 27/76 (35.53%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  347 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 574
            DSG  ++++F A WCGPCR+I P + EL+K++   +  +KV+ D+   +A  Y + ++P+ +I K G++ + ++GA
Sbjct:   25 DSGKLIVIDFTASWCGPCRVITPYVSELAKKF-PHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGA 99          
The following BLAST results are available for this feature:
BLAST of FC877271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PDIA6_RAT1.156e-1135.92Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE1.156e-1135.92Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
TRXH_ORYSJ1.510e-1138.16Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.510e-1138.16Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
PDIA6_PONAB1.510e-1135.92Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN1.510e-1135.92Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
TRXH1_ARATH1.972e-1137.72Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
NGLY1_CAEEL1.972e-1142.11Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TXL1_SCHPO3.363e-1137.93Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
TRXH_FAGES4.392e-1135.53Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BF07RM1 EHR Citrus clementina cDNA clone KN0AAN2BF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877271 ID=FC877271; Name=FC877271; organism=Citrus clementina; type=EST; length=657bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCA
GACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTC
AGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGT
TGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACT
CTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGC
CGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAA
GCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTA
GATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAG
AAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCGCCAG
CATAGAGAAATTCTTGTATACTTGGTAAGTAAAGGACGCGTTTGCTAGAA
ACAGGCT
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