FC877271

Overview
NameFC877271
Unique NameFC877271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:5..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.483e-22
Identity = 45/100 (45.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  317 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            TD  +Q+ +L+S    LV+FWA WCGPC M+ P+I+EL+  Y GK    K+N DE+P+ A +YGIRSIPT++I K G+  D ++GA+PK+ +   +++ +
Sbjct:    9 TDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKLDEHI 108          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 3.242e-22
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            VTD +++  VL +  PVLV+FWA WCGPCR I P ++ ++ +Y  K++  K+N DE+P  A +YG+ SIPT+ +++ GE   T++GA PK+ +   +E F+
Sbjct:    8 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 108          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.609e-21
Identity = 46/101 (45.54%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            V D+ +   VL S +PV+V+FWAPWCGPCR+I PI+D+L+ +Y G+L   KVNTD++   A++ GI+ IPT++IFK+G +   ++GA P++      +K L
Sbjct:    7 VHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREIFDKVL 107          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 45/98 (45.92%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  317 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEK 610
            TD  +Q+ VLD+ +PVLV+FWA WC PC+ I P+++ELS +Y GK+K  KV+       A +Y IR+IP +++FK+GE     +GA P+S L A I++
Sbjct:    9 TDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFKDGEVVAQQVGAAPRSKLAAFIDQ 106          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 46/103 (44.66%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  314 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 46/103 (44.66%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  314 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 46/103 (44.66%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  314 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 46/103 (44.66%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  314 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of FC877271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
THIO2_CHLTE2.483e-2245.00Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO_STRCO3.242e-2242.57Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]
THIO_CHLAA1.609e-2145.54Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO2_CORNE2.745e-2145.92Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
THIO2_SHIFL4.682e-2144.66Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI4.682e-2144.66Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL64.682e-2144.66Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO574.682e-2144.66Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]
THIO_STAAW7.986e-2147.52Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU7.986e-2147.52Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BF07RM1 EHR Citrus clementina cDNA clone KN0AAN2BF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877271 ID=FC877271; Name=FC877271; organism=Citrus clementina; type=EST; length=657bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCA
GACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTC
AGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGT
TGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACT
CTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGC
CGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAA
GCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTA
GATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAG
AAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCGCCAG
CATAGAGAAATTCTTGTATACTTGGTAAGTAAAGGACGCGTTTGCTAGAA
ACAGGCT
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