FC877271

Overview
NameFC877271
Unique NameFC877271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:5..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 34/98 (34.69%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  323 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            A +  ++  S  PVLV+F+A WCGPC+M+ PI++++      +++  K++TD+ P+IAT+Y I+S+PT+++FK G+    + G    + L   ++ F+
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV 105          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  305 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            V  +TDA ++S VL +  PVLV FWA WCGPC+++ P+I+  +  Y  +LK  K+  D +P+   +Y +  +P + + K  +  D+  G + K  L + ++  L
Sbjct:    5 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 108          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            +TDA ++        PVLV FWA WCGPCR++ P I  ++K Y  KLK  K+  D +P+   +  +  +P + +FKN E   T  GA+ K  L   +++ L
Sbjct:    6 ITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNELVMTHEGAIAKPKLLELLKEEL 106          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 34/83 (40.96%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  362 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEK 610
            VL++F+A WCGPC+M+ P+++ L  + V  +   KVN D+ P+ A +YG+ SIPT+++FK+G++ D V+G   K +L   I +
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLESLEAE-VSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQ 100          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 36/106 (33.96%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  305 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK--KDTVIGAVPKSTLTASIEKFL 616
            +  + ++ + S VL+S  PVLVEF A WCGPC++I+P ++ LS++Y  KL   K++ D +P +   + +  +P  ++FK+G++       GA+ K+ L   I+  L
Sbjct:   71 IKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLL 176          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  308 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            P  + A ++  V D+  PV+V+F A WCGPC+ I P +++LS+ + G ++ YKV+ DE   +A   G+ ++PT   +K GE+ + V GA P + + A ++  L
Sbjct:    5 PIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTG-IQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANP-AAIQAGVKAIL 105          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 34/91 (37.36%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  347 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            +SG  ++++FWA WCGPCR+I PI ++ S++Y    +   KV+ D +  I+    IR++PT  ++K+G+K D ++GA P + L + ++K L
Sbjct:   16 NSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANP-TALESLVQKSL 105          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  308 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            P  + A +Q  VL++   V+V+ +A WCGPC+ I P +++ ++ Y      Y+++ DE   +A   GIR++PT ++FK+G+K   V+GA P   L A I+  L
Sbjct:    9 PITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDA-SFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANP-GALEAGIKALL 109          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 32/96 (33.33%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  329 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L A ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 32/96 (33.33%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  329 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L A ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
The following BLAST results are available for this feature:
BLAST of FC877271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
THIO1_SYNY36.548e-1534.69Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIO2_ANASP1.459e-1433.65Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO2_SYNY31.905e-1436.63Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO_CHLCV5.543e-1440.96Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRXX_ARATH1.235e-1333.96Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO_PENCH1.613e-1335.92Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_COPCM2.107e-1337.36Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_EMENI3.593e-1335.92Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIOM_RAT4.693e-1333.33Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE4.693e-1333.33Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BF07RM1 EHR Citrus clementina cDNA clone KN0AAN2BF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877271 ID=FC877271; Name=FC877271; organism=Citrus clementina; type=EST; length=657bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCA
GACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTC
AGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGT
TGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACT
CTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGC
CGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAA
GCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTA
GATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAG
AAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCGCCAG
CATAGAGAAATTCTTGTATACTTGGTAAGTAAAGGACGCGTTTGCTAGAA
ACAGGCT
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