FC877271

Overview
NameFC877271
Unique NameFC877271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7097 contig Ccv1_Contig7097:5..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 32/96 (33.33%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  329 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L A ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  347 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEK 610
            DS   ++V+F+A WCGPCRMI P  + LS ++ G     KVNTD +  I  RY I ++PT + FKN ++ D+V GA  +S + ++I K
Sbjct:   20 DSNRLIIVDFFANWCGPCRMISPAFERLSMEF-GNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGA-NESAIISTIRK 105          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  359 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 574
            P++V+F A WCGPC+MI P+ + LS  Y GK+   KV+ D   ++A   GI ++PT  ++K+G K D ++GA
Sbjct:   27 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGA 98          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 32/96 (33.33%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  329 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L A ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  350 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 574
            SG  V+++F+A WCGPC+MI P + ELS QY   +   KV+ DE   IA  Y I S+PT +  KNG K +   GA
Sbjct:   19 SGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGA 93          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  302 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKFL 616
            ++ +V D T +  V+ S  PV+V+F A WCGPC+ + P ++E      G +   K+N D +  +A  YGI ++PTV  FKNGEK     G +    L   IE  L
Sbjct:   41 DIDSVEDFTEK--VIQSSVPVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFSGVLDDEQLDDFIEDVL 143          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  347 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEK 610
            +S   ++++F A WC PCRMI PI ++L+K+++     +KV+ DE  S+A  +G+ ++PT +  K GE  D ++GA  K  L A I K
Sbjct:   26 ESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGA-NKEDLQAKIVK 112          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  359 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKF 613
            P +++F+A WCGPC+M+ PI ++LSK+Y   +  YKV+TD+   I++  G++S+PT++      K    +G + +      I+ F
Sbjct:   30 PAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVDGKPKVSVGFLQEDAFENIIKDF 114          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  305 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTASIEKF 613
            V  VT       ++     V+V+F+A WCGPC+ I P  +E SK Y  K+   KV+ DE   +  +  I S+PT  ++KNG   DT++GA   S L   IEK+
Sbjct:    2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 102          
BLAST of FC877271 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  332 QSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIG 571
            Q L+L     V+++F+A WCGPC++I P +DEL+ +Y  ++   KVN DE+  I   Y + S+PT +  K G   +  +G
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVG 92          
The following BLAST results are available for this feature:
BLAST of FC877271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
THIOM_HUMAN4.693e-1333.33Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
NGLY1_CAEBR4.693e-1343.18Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXH_CHLRE6.129e-1343.06Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIOM_BOVIN6.129e-1333.33Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
THIO2_DROYA8.005e-1346.67Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_CAEEL1.045e-1237.14Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]
TRXH4_ARATH1.365e-1238.64Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
THIO_BORBU1.365e-1234.12Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO_PLAF71.783e-1237.86Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIOT_DROME1.783e-1237.50Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BF07RM1 EHR Citrus clementina cDNA clone KN0AAN2BF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877271 ID=FC877271; Name=FC877271; organism=Citrus clementina; type=EST; length=657bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCA
GACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTC
AGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGT
TGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACT
CTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGC
CGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAA
GCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTA
GATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAG
AAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCGCCAG
CATAGAGAAATTCTTGTATACTTGGTAAGTAAAGGACGCGTTTGCTAGAA
ACAGGCT
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