FC877779

Overview
NameFC877779
Unique NameFC877779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10458 contig Ccv1_Contig10458:1..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.500e-42
Identity = 90/111 (81.08%), Postives = 97/111 (87.39%), Query Frame = 2
Query:  161 ISKDGG--GVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            + K+ G  G +        ++ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   30 LPKESGSSGADKKKKKSKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.500e-42
Identity = 89/107 (83.18%), Postives = 95/107 (88.79%), Query Frame = 2
Query:  167 KDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            K+GG  +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 KEGGEGKRGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.558e-42
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 2
Query:  176 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            GG +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   33 GGADKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.341e-42
Identity = 89/105 (84.76%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  173 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 171.014 bits (432), Expect = 3.341e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 2
Query:  212 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            +VETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   51 SVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSN 142          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 4.364e-42
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 2
Query:  176 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            GG +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 GGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 4.364e-42
Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 2
Query:  167 KDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            K+GG  +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 KEGGEGKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 5.699e-42
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 2
Query:  176 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            GG +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   51 GGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 7.443e-42
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 2
Query:  176 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            GG +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GGDKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.721e-42
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  173 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
The following BLAST results are available for this feature:
BLAST of FC877779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_SOLLC1.500e-4281.08Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B2_MAIZE1.500e-4283.18Histone H2B.2 OS=Zea mays PE=2 SV=3[more]
H2B5_WHEAT2.558e-4284.62Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B6_ORYSJ3.341e-4284.76Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_SOLLC3.341e-4294.57Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]
H2B4_MAIZE4.364e-4284.62Histone H2B.4 OS=Zea mays PE=3 SV=3[more]
H2B3_MAIZE4.364e-4281.31Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B5_MAIZE5.699e-4284.62Histone H2B.5 OS=Zea mays PE=2 SV=3[more]
H2B1_WHEAT7.443e-4284.62Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B8_ORYSJ9.721e-4283.81Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]

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Properties
Property NameValue
Genbank descriptionC02004H04SK IF1 Citrus clementina cDNA clone C02004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877779 ID=FC877779; Name=FC877779; organism=Citrus clementina; type=EST; length=551bp
CTAATATCATTTTCTATCAAATTCAGAAGAATCTTCTCACGCCCTTCAGT
TTTTCTCGTCAAAAGGAACGATGGCGCCGAAAGCCGAGAAGAAGCCAGCG
GAGAAAAAGCCGGTAGCCGAGAAAGCCCCAGCCGAGAAGAGGCCGAAAGC
CGAGAAGAAGATCTCGAAAGATGGCGGCGGCGTCGAGAAAAAGAAGAGGA
AGTTGAAGAAGAATGTGGAGACGTACAAGATCTACATTTTCAAGGTCCTG
AAGCAGGTTCATCCCGATATCGGTATCTCCAGCAAGGCCATGGGCATCAT
GAACAGTTTCATCAACGATATCTTCGAGAAATTAGCCCAGGAGGCGTCTC
GTCTCGCTAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCAG
ACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGTC
GGAGGGGACCAAGGCCGTTACCAAGTTCACGAGCTCTTGATTTTGTGCAA
TTTTTTTGTCTTGTTAGTGTTCCTTTGAAATTGTTCCTTTCGTTACTTTT
T
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