FC877779

Overview
NameFC877779
Unique NameFC877779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10458 contig Ccv1_Contig10458:1..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.127e-40
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 2
Query:  176 GGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            GG +        ++ETYKIYIFKVLKQVHPDIGISSKAM I NSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 GGEKKGKKKSKKSMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 135          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 5.334e-40
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = 2
Query:  173 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 484
            G G +         VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   49 GSGEKKDKKKKKSAVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 6.967e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 2
Query:  215 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 484
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 6.967e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 2
Query:  215 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 484
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   63 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 6.967e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 2
Query:  215 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 484
            VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   66 VETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 155          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.552e-39
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 2
Query:  218 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 155          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.552e-39
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 2
Query:  218 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 157          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.453e-37
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 2
Query:  221 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 484
            T KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA EASRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTKFTS
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTKFTS 118          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.453e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2
Query:  218 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC877779 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.453e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 2
Query:  218 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 487
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
The following BLAST results are available for this feature:
BLAST of FC877779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_WHEAT3.127e-4080.77Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B1_CHLRE5.334e-4079.81Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_CHLRE6.967e-4090.00Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE6.967e-4090.00Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE6.967e-4090.00Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B4_VOLCA1.552e-3988.89Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA1.552e-3988.89Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_PEA1.453e-3790.91Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B3B_MOUSE1.453e-3783.33Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN1.453e-3783.33Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]

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Properties
Property NameValue
Genbank descriptionC02004H04SK IF1 Citrus clementina cDNA clone C02004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877779 ID=FC877779; Name=FC877779; organism=Citrus clementina; type=EST; length=551bp
CTAATATCATTTTCTATCAAATTCAGAAGAATCTTCTCACGCCCTTCAGT
TTTTCTCGTCAAAAGGAACGATGGCGCCGAAAGCCGAGAAGAAGCCAGCG
GAGAAAAAGCCGGTAGCCGAGAAAGCCCCAGCCGAGAAGAGGCCGAAAGC
CGAGAAGAAGATCTCGAAAGATGGCGGCGGCGTCGAGAAAAAGAAGAGGA
AGTTGAAGAAGAATGTGGAGACGTACAAGATCTACATTTTCAAGGTCCTG
AAGCAGGTTCATCCCGATATCGGTATCTCCAGCAAGGCCATGGGCATCAT
GAACAGTTTCATCAACGATATCTTCGAGAAATTAGCCCAGGAGGCGTCTC
GTCTCGCTAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCCAG
ACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGTC
GGAGGGGACCAAGGCCGTTACCAAGTTCACGAGCTCTTGATTTTGTGCAA
TTTTTTTGTCTTGTTAGTGTTCCTTTGAAATTGTTCCTTTCGTTACTTTT
T
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