FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACLA (Putative N-acetyldiaminopimelate deacetylase OS=Lactococcus lactis subsp. lactis GN=dapL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRA---ELDRMEIGYKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L  +RR +HQ PE+  +E+ET + L A   EL + +   +    +TGI  ++ G+     +  R D+D LPI+E  +  Y SK  G+MHACGHD H+ + +G  +  K  E   +  ++ +FQPAEE   G K M    A E+   +  + +HV  +   G I +    L AG
Sbjct:    4 LIEIRRQLHQIPEIGLEEYETQKYLLAIIQELTQNKPFIQVRTWQTGILVYLAGSQSQKTIGWRTDIDGLPIEELTDLPYASK-NGRMHACGHDIHMTVALGLLE--KMSESQPRDNLLFLFQPAEENEAGGKLMYDARAFENWLPDEFYGLHVRPDLKVGDIATNQHTLFAG 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRGC (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.362e-16
Identity = 60/181 (33.15%), Postives = 93/181 (51.38%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLR-------AELDRMEIGYKYPLAKTGIRAWVGTGGPPF--VALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            +D+L+ +RR +HQ PE+  +E++T   L        A+LD +EI       +TGI  ++  G  P+  +  R D+D LPI E    ++ S   G+MHACGHD H+ + +G  +   S +      ++ +FQPAEE   G   M  DGA  D   +  + +HV  +   G I +  G L AG
Sbjct:    2 LDYLK-IRRDLHQIPEIGLEEYKTHAYLMQVIEGLTADLDFVEIR----TWRTGILVFI-KGSSPYKTIGWRTDIDGLPIVEETGLDFASTHEGRMHACGHDMHMTVALGLLEQALSAQP--NHNLLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDLKVGDIATNRGTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACHK (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus thuringiensis subsp. konkukian GN=dapL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.362e-16
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFEEWKTQQYILDYIGTLLNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRZP (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain P1031) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 54/173 (31.21%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  DGA  D      + +HV  +   G I +    L  G
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLKVGQIATNTHTLFVG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRPI (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  D A  D   +  + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRALHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDDAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRZJ (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain JJA) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  D A  D   +  + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDDAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRR6 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  D A  D   +  + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDDAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRPJ (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  D A  D   +  + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDDAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRP2 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  D A  D   +  + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDDAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRZT (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=dapL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.176e-16
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M   GA  D   +  + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEAGAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAG 174          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_LACLA1.043e-1633.53Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_STRGC1.362e-1633.15Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_BACHK1.362e-1631.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_STRZP3.034e-1631.21Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRPI3.034e-1631.21Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRZJ3.963e-1631.21Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRR63.963e-1631.21Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRPJ3.963e-1631.21Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRP23.963e-1631.21Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRZT5.176e-1631.21Putative N-acetyldiaminopimelate deacetylase OS=St... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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