FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LISMH (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dapL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.455e-18
Identity = 57/168 (33.93%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMM--ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +HQ PE  ++E +T   L   + ++   + +    +TGI   V    P   +  R D+DALPI E     + SK  G MHACGHD H+++ +G      S+    K  ++ +FQPAEE   GAK +M  A+ A    ++I+ +H++ E+  G I  +PG L A
Sbjct:    7 AIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVKKWRTGILVLVKGNNPEKTIGYRTDIDALPITEETGLPFASKHPGNMHACGHDLHMSIALGVLTHFASKP--AKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACC2 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain G9842) GN=dapL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.455e-18
Identity = 56/174 (32.18%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            TV     +RR +H+ PE+ F+E+ET + +   +  + + + +    KTG+   V    P   +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   + K+    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+  G I ++ G L A
Sbjct:    2 TVSKFVQIRRDLHRIPEIGFKEWETQQYILDYIGTLSLEFVEVKTWKTGVIVKVNGKNPEKIIGYRADIDGLPITEETGYEFASIHEGMMHACGHDVHTT--IGLGLLTKAVSERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYAVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACH4 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus helveticus (strain DPC 4571) GN=dapL PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.482e-18
Identity = 60/178 (33.71%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLL-------RAELDRMEIGYKYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED---VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L  +RR +H+ PELA QE ET   L        +E   +++  + P   T I   +    P   +  R D+DALP++E     + S   G MHACGHD H+++ +G        E+  K  ++  FQPAEE+ +G K+   DG  E     +  + +H + E P G IG R G L AG
Sbjct:    9 LIQIRRHLHEIPELALQEKETHDYLLKIIKGFNSEFLTIKVPEELP---TAILVLIKGSNPQRTIGYRTDIDALPVEEKTNLPFSSTHPGIMHACGHDIHMSVALGLLSYFS--ENQPKDNLLFFFQPAEESESGGKKAYEDGIFEGKFRPDEFYGLHDNPELPAGAIGCREGTLFAG 181          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: ABGA_ECOLI (Aminobenzoyl-glutamate utilization protein A OS=Escherichia coli (strain K12) GN=abgA PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.482e-18
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  437 TGIRAWVGTGGP-PFVALRADMDALPIQEAVEWEYK-------SKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVI 781
            TGI A + TG P P +A R DMDAL + E  +  ++       S  AG MHACGHD H A+ +G A  LK  E  L G + LIFQPAEE   GA+ M+  G ++DV+   AVH+    P G +
Sbjct:   96 TGIVATLDTGRPGPVMAFRVDMDALDLSEEQDVSHRPYRDGFASCNAGMMHACGHDGHTAIGLGLAHTLKQFESGLHGVIKLIFQPAEEGTRGARAMVDAGVVDDVDYFTAVHIGTGVPAGTV 218          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACWK (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dapL PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.242e-18
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            TV     VRR +H+ PE+ F+E++T + +   +  +   Y +    KTG+   V    P   +  RAD+D LPI E   +EY S   G MHACGHD H    IG   +  +    +   ++ IFQPAEE   GA  M+    L++     I  +H++ E+  G I ++ G L A
Sbjct:    2 TVSKFVQVRRDLHKIPEIGFKEWKTQQYILDYIGTLPNEYLEVKTWKTGVIVKVNGKNPEKIIGYRADIDGLPITEETGYEYSSVHEGMMHACGHDLHAT--IGLGLLTAAVSERIDDDLVFIFQPAEEGPGGALPMLESDELKEWKPNMILGLHIAPEYSVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACCB (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus casei (strain BL23) GN=dapL PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.530e-18
Identity = 62/175 (35.43%), Postives = 84/175 (48.00%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY----KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE---DVEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L ++RR +HQ PELA QE ET  LL   +  +   Y      P   T +   V    P   +  R D+DALP+ E     + SK +G  HACGHD H+ + +G        EH  K  +I  FQPAEE+ NG K     GA      ++  + +H   + P G I +R G L AG
Sbjct:    6 LITLRRQLHQIPELALQEKETHALLLKTIQGLPQTYLTIRTLPDLPTALLVKVQGRDPQRTIGYRTDIDALPVTEKTGLPFASKHSGIAHACGHDIHMTVALGILSYF--AEHQPKDNLIFFFQPAEESKNGGKLAYDMGAFTGDWHIDEFYGLHDRPDLPAGTISTRLGTLFAG 178          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACC3 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus casei (strain ATCC 334) GN=dapL PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.530e-18
Identity = 62/175 (35.43%), Postives = 84/175 (48.00%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY----KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE---DVEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L ++RR +HQ PELA QE ET  LL   +  +   Y      P   T +   V    P   +  R D+DALP+ E     + SK +G  HACGHD H+ + +G        EH  K  +I  FQPAEE+ NG K     GA      ++  + +H   + P G I +R G L AG
Sbjct:    6 LITLRRQLHQIPELALQEKETHALLLKTIQGLPQTYFTIRTLPDLPTALLVKVQGRDPQRTIGYRTDIDALPVTEKTGLPFASKHSGIAHACGHDIHMTVALGILSYF--AEHQPKDNLIFFFQPAEESKNGGKLAYDMGAFTGDWHIDEFYGLHDRPDLPAGTISTRLGTLFAG 178          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACAC (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus acidophilus GN=dapL PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.222e-18
Identity = 59/175 (33.71%), Postives = 84/175 (48.00%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLL-----RAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE---DVEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L  +RR +H+ PELA QE ET   L       + D + I     L    +    G      +  R D+DALP+QE     + SK +G MHACGHD H+ + +G        E+  K  ++  FQPAEE+ +G K+    G  +     +  + +H + E P G IG R G L AG
Sbjct:    9 LIQIRRHLHEIPELALQEKETHDYLLKVIKNLKQDHLTIVVPKTLPTAILGLVKGINPKKTIGYRTDIDALPVQEKTGLPFTSKHSGIMHACGHDIHMTVALGLLSYFS--ENQPKDNLLFFFQPAEESESGGKQAYEKGLFQGKFKPDEFYGLHDNPELPAGSIGCRMGTLFAG 181          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_PEDPA (Putative N-acetyldiaminopimelate deacetylase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dapL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAEL-----DRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED---VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            +RR  H++PELA +EF+T  LL + +     + +EI     L    +    G+     +  RAD+DALP+ E    ++ SK  G MHACGHD H+ + +G  +   +  H  +  +I  FQPAEE+ +G+ R        +       + +H +   P GVIG R G L AG
Sbjct:   11 IRRQFHESPELALKEFQTHALLLSVIRSLPQNLLEIKTIPELPTALLVRVAGSHPHRTIGYRADIDALPVNEKTGLDFASKTPGIMHACGHDIHMTVALGILEYFAN--HQPQDNLIFFFQPAEESHSGSVRAFNANIFTNQFRPNEFYGLHSTPTLPAGVIGCRMGTLFAG 180          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACCR (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dapL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.609e-17
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            TV     +RR +H+ PE+ F+E++T + +   +  +   + +    KTG+   V    P   +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   + K+    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+  G I ++ G L A
Sbjct:    2 TVSKFVQIRRDLHRIPEIGFKEWKTQQYILDYIGTLSHEFVEVKTWKTGVIVKVNGKNPEKIIGYRADIDGLPITEETGYEFASIHEGMMHACGHDVHTT--IGLGLLTKAVSERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYAVGTIATKEGLLFA 173          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_LISMH1.455e-1833.93Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_BACC21.455e-1832.18Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LACH42.482e-1833.71Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
ABGA_ECOLI2.482e-1843.90Aminobenzoyl-glutamate utilization protein A OS=Es... [more]
DAPL_BACWK3.242e-1833.33Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LACCB5.530e-1835.43Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACC35.530e-1835.43Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACAC7.222e-1833.71Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_PEDPA9.432e-1833.14Putative N-acetyldiaminopimelate deacetylase OS=Pe... [more]
DAPL_BACCR1.609e-1731.61Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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