FC877782

Overview
NameFC877782
Unique NameFC877782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3765 contig Ccv1_Contig3765:7..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.331e-39
Identity = 85/141 (60.28%), Postives = 101/141 (71.63%), Query Frame = 3
Query:   30 MSLIPSFFGN--RRSSVSDPFSLD-VWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            MSLIP+ + N  RRS++ DPFSLD +WDPF  F  PS  S+   S+   ET+A  NAR+DWKETPEAHVFKADLPG+              L+ISGQR  EKE+KNDTWHRVERSSG F R+FRLPEN K+DQ+KA ME+G
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPF--FGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENG 139          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.395e-38
Identity = 86/157 (54.78%), Postives = 100/157 (63.69%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVWDPFRDFPFPSGYSSALS--SQFP----PETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            RRS+V DPFSLD+WDPF  FPF SG SS+ S    FP     ET+A   AR+DWKETPEAHVFKAD+PGL              LQISG+R  E+E+K D WHRVERSSG F RRFRLP+N K +QIKASME+G                 +I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.279e-37
Identity = 81/134 (60.45%), Postives = 93/134 (69.40%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVWDPFRDFPFPSGY--SSALSSQFP----PETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 443
            RRS+V DPFSLD+WDPF  FPF SG   S ++   FP     ET+A   AR+DWKETPEAHVFKAD+PGL              LQISG+R  E+E+K D WHRVERSSG F RRFRLPEN K +QIKASME+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENG 138          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 82/151 (54.30%), Postives = 95/151 (62.91%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            RRS+V DPFSLD+WDPF      S + S + +    +T+A  NAR+DWKETPE+HVFKADLPG+              L ISGQR  EKEDKND WHRVERSSG F RRFRLPEN K+DQ+KA ME+G                 AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPF-----DSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.721e-37
Identity = 81/151 (53.64%), Postives = 95/151 (62.91%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            RRS+V DPFSLD+WDPF      S + S + +    +T+A  NAR+DWKETPE+HVFKADLPG+              L ISGQR  EKEDKND WHRVERSSG F RRFRLPEN K+DQ+KA +E+G                 AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPF-----DSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.347e-37
Identity = 81/151 (53.64%), Postives = 97/151 (64.24%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            RRS+V DPFSLD+WDPF  FPF SG S +L  +   + +A   AR+DWKETPEAHVFKAD+PGL              LQISG+R  E+E+K D WHRVERSSG F RRFRLPEN K +QIKASME+G                 +I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSG-SGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.150e-36
Identity = 80/155 (51.61%), Postives = 95/155 (61.29%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPP----ETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            RR +  DPFSLD+WDP   FPF SG SS+ S    P    + +A   AR+DWKETPE HVFKAD+PGL              LQISG+R  E+E+K+D WHRVERSSG F RRFRLPEN K +QIKASME+G                 +I+ISG
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.549e-35
Identity = 81/151 (53.64%), Postives = 93/151 (61.59%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            RRS+V DPF+ D WDPF        + S + +    +T+A  NARVDWKETPE+HVFKADLPG+              L ISGQR  EKEDKND WHRVERSSG F RRFRLPEN K+DQ+KASME+G                 AIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGV-----FRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.148e-32
Identity = 80/156 (51.28%), Postives = 94/156 (60.26%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVW-DPFRDF----PFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            RRS+V DPF+ D+W DPF  F    P  SG SS        ET+A  NARVDWKETPEAHVFK DLPG+              L +SG+R  EKEDKND WHRVERSSG F RRFRLPE+ K++++KA +E+G                 AIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS--------ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of FC877782 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.282e-29
Identity = 76/156 (48.72%), Postives = 93/156 (59.62%), Query Frame = 3
Query:   60 RRSSVSDPFSLDVW-DPFRDF----PFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 512
            RR++V DPF+ D+W DPF  F    P  SG  S        ET+A  NAR+DWKETPEAHVFKADLPG+              L +SG+R  EKEDKND WHRVERSSG F RRFRL E+ K++++KA +E+G                 AI+ISG
Sbjct:    5 RRTNVFDPFA-DLWADPFDTFRSIVPAISGGGS--------ETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of FC877782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
HSP11_CHERU2.331e-3960.2818.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17A_ORYSJ4.395e-3854.7817.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ORYSJ1.279e-3760.4518.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ1.670e-3754.3016.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ3.721e-3753.6416.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS174_ORYSJ6.347e-3753.6417.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ3.150e-3651.6117.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ4.549e-3553.6416.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS16A_WHEAT6.148e-3251.2816.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT1.282e-2948.7216.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA62BH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA62BH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877782 ID=FC877782; Name=FC877782; organism=Citrus clementina; type=EST; length=675bp
CGAAAGCCGTATCACTCTATTGAGAAACGATGTCGTTGATTCCAAGCTTC
TTCGGAAACCGACGCAGCAGTGTCTCTGATCCATTTTCACTCGACGTTTG
GGATCCATTCAGGGACTTCCCTTTCCCTTCCGGTTATTCGTCTGCGCTGT
CCTCTCAGTTCCCTCCAGAAACCTCTGCTGTCGTTAATGCCCGCGTGGAC
TGGAAGGAAACCCCGGAAGCCCACGTGTTCAAGGCCGATCTTCCGGGGCT
CCGGAAAGAGGAAGTGAAGGTCGAGGTCGAAGACGACAGGGTGCTTCAGA
TAAGCGGTCAGAGGAAGATTGAGAAGGAAGACAAGAACGACACGTGGCAT
CGCGTTGAGCGCAGCAGTGGCATGTTCTCAAGGAGGTTCAGGTTACCTGA
GAATGTGAAGATGGATCAGATTAAGGCTTCCATGGAGAGTGGTGTGCTCA
CTGTTACTGTTCCGAAAGTGGAGGTGACCAAACCTGATGTTAAGGCTATC
GAAATCTCTGGTTAAACCAGTGTCTGTCTGTATGTCTTTATGCATACTTG
TATAAGGATGCTGTGATGTTTTGGTTTTGTAATTTGCTTGCATGAATGTT
TGTGTAATGGTATTCTGGGTGTAATCAATAAACTGGACTGTTTTTTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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