FC877791

Overview
NameFC877791
Unique NameFC877791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877791_ssr99 microsatellite FC877791_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:67..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 3.129e-104
Identity = 182/239 (76.15%), Postives = 197/239 (82.43%), Query Frame = 3
Query:  123 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            KDY DPPPAP  D  EL  WSF+RA IAEFIA            IGYK +TDP      C  VG+LGIAW+FGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQC GAICG G VKAF K  YN++GGGAN +A GYNKGT  GAE+IGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK++ WDD WIFWVG
Sbjct:   17 KDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVG 249          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 367.466 bits (942), Expect = 5.524e-101
Identity = 182/239 (76.15%), Postives = 194/239 (81.17%), Query Frame = 3
Query:  123 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            KDY DPPPAPL D  EL  WSFYRA+IAEFIA            IGYK Q+    + DQCGGVG LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL L RKVS+IRA++Y+VAQCLG I G G VK   K  YN  GGGAN +A GY+ GT LGAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN++KAWDD WIFW G
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAG 249          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.557e-95
Identity = 173/239 (72.38%), Postives = 188/239 (78.66%), Query Frame = 3
Query:  123 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            KDY +PPPAPL +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YM+ QCLGAICG G VK FQ + Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ +WDD WIFWVG
Sbjct:   30 KDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVG 262          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 347.821 bits (891), Expect = 4.529e-95
Identity = 173/240 (72.08%), Postives = 187/240 (77.92%), Query Frame = 3
Query:  120 AKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            +KDY +PPPAP  +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ AWDD WIFWVG
Sbjct:   29 SKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVG 262          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 4.529e-95
Identity = 173/239 (72.38%), Postives = 187/239 (78.24%), Query Frame = 3
Query:  123 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            KDY +PPPAP  +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ + Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ AWDD WIFWVG
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVG 261          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.318e-94
Identity = 171/241 (70.95%), Postives = 188/241 (78.01%), Query Frame = 3
Query:  117 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            S KDY +PPPAPL +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+NK+ AWDD W+FWVG
Sbjct:   27 SDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVG 261          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 345.895 bits (886), Expect = 1.721e-94
Identity = 170/239 (71.13%), Postives = 186/239 (77.82%), Query Frame = 3
Query:  123 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G       N +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL YMV QCLGAICG G VK FQK  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN+  AWDD WIFWVG
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV------NNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVG 263          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.248e-94
Identity = 171/241 (70.95%), Postives = 187/241 (77.59%), Query Frame = 3
Query:  117 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            S KDY +PPPAP  +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ +WDD W+FWVG
Sbjct:   27 SDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVG 261          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.248e-94
Identity = 171/241 (70.95%), Postives = 187/241 (77.59%), Query Frame = 3
Query:  117 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            S KDY +PPPAP  +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ +WDD W+FWVG
Sbjct:   27 SDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVG 261          
BLAST of FC877791 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.457e-93
Identity = 167/239 (69.87%), Postives = 185/239 (77.41%), Query Frame = 3
Query:  123 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVG 839
            KDY +PPPAPL + EEL  WSFYRA IAEF+A            +G         ++ +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL YMV QCLGAICG G VK FQ+  Y   GGGAN +  GY KG GLGAEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA++YN+  AW+D WIFWVG
Sbjct:   31 KDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGVSK------SSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVG 263          
The following BLAST results are available for this feature:
BLAST of FC877791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PIP1_ATRCA3.129e-10476.15Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_ORYSJ5.524e-10176.15Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH1.557e-9572.38Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP15_ARATH4.529e-9572.08Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH4.529e-9572.38Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_ARATH1.318e-9470.95Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP12_ORYSJ1.721e-9471.13Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_VICFA2.248e-9470.95Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.248e-9470.95Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP15_MAIZE1.457e-9369.87Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877791 ID=FC877791; Name=FC877791; organism=Citrus clementina; type=EST; length=862bp
CACACAGTCGTAGCTCTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAA
AATAAAAGGGAAAAAATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGG
CGGCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCCCCCTCCGGCGC
CGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTA
ATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTTGAC
TGTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGT
GTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATC
TTCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCC
GGCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAG
CTCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGG
TTTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGC
CAATGAGCTAGCTGATGGATACAACAAGGGCACCGGACTGGGTGCTGAGA
TCATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATCCT
AAGAGGAGCGCAAGAGACTCCCATGTTCCGGTCTTGGCACCACTCCCCAT
TGGGTTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACCGGAA
CCGGCATCAACCCAGCTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAG
GAGAAAGCCTGGGATGACCAATGGATCTTCTGGGTTGGACATTCATTGGA
GCTTTCGTTGCT
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