FC877794

Overview
NameFC877794
Unique NameFC877794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length804
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6007 contig Ccv1_Contig6007:1..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877794 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.709e-22
Identity = 75/254 (29.53%), Postives = 121/254 (47.64%), Query Frame = -1
Query:   55 ITFTPSPDYNDSYAFINGIEIVSMPLNFYYTAAXXXXXXXXGFRFVGQANPYSILNRNALATLYRINVGGKHIEPSYDTGGMYRTWYMDDLYLTDARPSALPVNQSIHLTWKRNYS----APDLVYKTARTMGQDREINEKYNLTWEFEVDSGFTYFLRFHFCEFQIEVTEEGDRVFQIFIANLTAEVQADVIAWTGANSVAVYRDYAVTIGPKPNEENIKQNLSIQLHPAPRWRTKYSEAILNGLEIFKVDNN 804
            +TFTPS    DS+AF+N +E+VS+P   +               F G    +  L+  AL T+YR+N+GG  + PS DT  + R W  D  +L + +     V++   + +   ++    AP  VY T   M      +  +N+TW+F+VD GF YFLRFHFC+   +   +    F +++ ++      D+ ++        Y    VT G     + I+ ++           T Y  AILNGLEI K++N+
Sbjct:  153 LTFTPS---GDSFAFLNALEVVSVPDTLFSGDPS----------FAGSPGKFQGLSWQALETVYRVNMGGPRVTPSNDT--LSRIWEPDSEFLVE-KNLVKSVSKIASVDYVPGFATEETAPRTVYGTCTEMNSADNPSSNFNVTWDFDVDPGFQYFLRFHFCDIVSKALNQ--LYFNLYVDSMDVVENLDLSSYLSNTLSGAYAMDFVT-GSAKLTKRIRVSIG-----RSSVHTDYPTAILNGLEIMKMNNS 382          
BLAST of FC877794 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 80/244 (32.79%), Postives = 106/244 (43.44%), Query Frame = -1
Query:   49 SYAFINGIEIVSMPLNFYYTAAXXXXXXXXGFRFVGQANPYSILNRNALATLYRINVGGKHIEPSYDTGGMYRTWYMDDLYLTD---ARPSALPVNQSIHLTWKRNYSAPDLVYKTARTMGQDREINEKYNLTWEFEVDSGFTYFLRFHFCEFQIEVTEEGDRVFQIFIANLTAEVQADVIAWTGANSVAVYRDYAVTIGPKPNEENIKQNLSIQLHPAPRWRTKYSEAILNGLEIFKVDNNGN 771
            S AFINGIE+VS P      A                 N +S L+  A  ++YR+NVGG  I P  DT G  RTW  D  YL D   A+         I+        AP  VY T   M   + I+  +N+TW F  +  F YF+R HFC+  I      D  F ++I   TA    D+    G  S   Y+D  V      N   +   L +Q+ P     T    AILNG+E+ K+ N+ N
Sbjct:  198 SAAFINGIELVSAPDELISDAGTSLFP----------VNGFSGLSDYAYQSVYRVNVGGPLITPQNDTLG--RTWTPDKEYLKDENLAKDVKTNPTAIIYPPGVTPLIAPQTVYATGAEMADSQTIDPNFNVTWNFPSNPSFHYFIRLHFCD--IISKSLNDLYFNVYINGKTAISGLDLSTVAGDLSAPYYKDIVV------NSTLMTSELQVQIGPMGE-DTGKKNAILNGVEVLKMSNSVN 420          
BLAST of FC877794 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.716e-21
Identity = 75/273 (27.47%), Postives = 127/273 (46.52%), Query Frame = -1
Query:   13 ITFTPSPDYNDSYAFINGIEIVSMPLNFYYTAAXXXXXXXXGFRFVGQANPYSILNRNALATLYRINVGGKHIEPSYDTGGMYRTWYMDDLYL--------TDARPSALPVNQSIHLTWKRNYSAPDLVYKTARTMGQDREINEKYNLTWEFEVDSGFTYFLRFHFCEFQIEVTEEGDRVFQIFIANLTAEVQADVIAWTGANSVAVYRDYAVTIGPKPNEENIKQNLSIQLHPAPRWRTKYSEAILNGLEIFKVDNNG-NLAGPNPERRTIP 804
            ++F PS   N+S  F+N IE+VS+P N     A            +  + P+S L+  A  T+YR+N+GG  +    DT G  R W  D  YL          A PS++  + S+        +AP++VY TA TMG     +  +N+TW   VD  F YF+R HFC+   +       VF +++ +  A    D+   T    V  ++D+        +  +++ +  + +   P  +   + A +NGLE+ K+ N   +L+G +  +  +P
Sbjct:  162 LSFIPS---NNSVVFVNAIEVVSVPDNLIPDQALA----------LNPSTPFSGLSLLAFETVYRLNMGGPLLTSQNDTLG--RQWDNDAEYLHVNSSVLVVTANPSSIKYSPSV-----TQETAPNMVYATADTMGDANVASPSFNVTWVLPVDPDFRYFVRVHFCDIVSQAL--NTLVFNLYVNDDLALGSLDLSTLTNGLKVPYFKDFI-------SNGSVESSGVLTVSVGPDSQADITNATMNGLEVLKISNEAKSLSGVSSVKSLLP 405          
BLAST of FC877794 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 77/249 (30.92%), Postives = 107/249 (42.97%), Query Frame = -1
Query:   49 SYAFINGIEIVSMPLNFYYTAAXXXXXXXXGFRFVGQANPYSILNRNALATLYRINVGGKHIEPSYDTGGMYRTWYMDDLYLTDAR--------PSALPVNQSIHLTWKRNYSAPDLVYKTARTMGQDREINEKYNLTWEFEVDSGFTYFLRFHFCEFQIEVTEEGDRVFQIFIANLTAEVQADVIAWTGANSVAVYRDYAVTIGPKPNEENIKQNLSIQLHPAPRWRTKYSEAILNGLEIFKVDNNGN 771
            S AFIN IE+VS P      +          F  +G    +S L+  A  ++YR+NVGG  I P  DT G  RTW  D  +L D          PSA+     +         AP  VY TA  M     I+  +N++W F  +  F Y +R HFC+  I      D  F ++I   TA    D+    G  +   Y+D  V      N   +   L +Q+ P     T    AILNG+E+ K+ N+ N
Sbjct:  199 SAAFINAIEVVSAPDELISDSGTAL------FPVIG----FSGLSDYAYQSVYRVNVGGPLIMPQNDTLG--RTWIPDKEFLKDENLAKDVKTTPSAIKYPPEV-----TPLIAPQTVYATAVEMANSLTIDPNFNVSWNFPSNPSFNYLIRLHFCD--IVSKSLNDLYFNVYINGKTAISGLDLSTVAGNLAAPYYKDIVV------NATLMGPELQVQIGPMGE-DTGTKNAILNGVEVLKMSNSVN 421          
BLAST of FC877794 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 66/241 (27.39%), Postives = 108/241 (44.81%), Query Frame = -1
Query:   64 YAFINGIEIVSMPLNFYYTAAXXXXXXXXGFRFVGQANPYSILNRNALATLYRINVGGKHIEPSYDTGGMYRTWYMDDLYL---TDARPSALPVNQSIHLTWKRNYSAPDLVYKTARTMGQD-REINEKYNLTWEFEVD-SGFTYFLRFHFCEFQIEVTEEGDRVFQIFIANLTAEVQADVIAWT-GANSVAVYRDYAVTIGPKPNEENIKQNLSIQLHPAPRWRTKYSEAILNGLEIFKV 768
            + F+N +E+ S P ++                    A  +S L+   L T++RINVGG  + P  DT  ++RTW +DD YL     AR +    + +          APD VY TA+ M +D +E+  ++N++W F+VD     + +R HFC+  I  +      F +FI    A    D+   T    +  +Y D+         E +    L I + P+         A+LNG+EI ++
Sbjct:  170 FGFVNAVEVFSAPKDYIMDQGTKLVIP-------NSAQIFSNLSSQVLETVHRINVGGSKLTPFNDT--LWRTWVVDDNYLLLRAAARRAWTTHSPNYQNGGATREIAPDNVYMTAQEMDRDNQELQARFNISWGFQVDEKRVLHLVRLHFCD--IVSSSLNQLYFNVFINEYLAFKDVDLSTLTFHVLASPLYIDFVA-------ESDRSGMLRISVGPSDLSNPARVNALLNGVEIMRI 392          
BLAST of FC877794 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.336e-12
Identity = 56/179 (31.28%), Postives = 85/179 (47.49%), Query Frame = -1
Query:  274 PDYNDSYAFINGIEIVSMPLNFYYTAAXXXXXXXXGFRFVGQANPYSILNRNALATLYRINVGGKHIEPSYDTGGMYRTWYMDDLYLTDARPSALPVNQSIH------LTWKRNYSAPDLVYKTARTMGQ--DREINEKYNLTWEFEVDSGFTYFLRFHFCEFQIEVTEEGDRVFQIFI 786
            PD++ S A IN IE+ S P +    +A                      ++N L T+YR+NVGG+ I P  DT G  RTW  DD      + SA  +N +        L+   + +APD VYKTA+ M +  + ++    N+TW F+V S   +F+R HF +  +      D  F +F+
Sbjct:  174 PDHS-SLALINAIEVFSAPDDLEIPSAS---------------------DKN-LHTIYRLNVGGEKITPDNDTLG--RTWLPDDDDFLYRKDSARNINSTQTPNYVGGLSSATDSTAPDFVYKTAKAMNRSSNEQVGMLMNVTWSFKVKSNHRHFIRIHFSDI-LSNLSNSDSDFYLFV 326          
The following BLAST results are available for this feature:
BLAST of FC877794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
Y5597_ARATH2.709e-2229.53Probable receptor-like protein kinase At5g59700 OS... [more]
Y2214_ARATH6.673e-2132.79Probable receptor-like protein kinase At2g21480 OS... [more]
THE1_ARATH8.716e-2127.47Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
Y4391_ARATH6.906e-1830.92Probable receptor-like protein kinase At4g39110 OS... [more]
Y5241_ARATH1.592e-1427.39Probable receptor-like protein kinase At5g24010 OS... [more]
Y2232_ARATH4.336e-1231.28Probable receptor-like protein kinase At2g23200 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA58BG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877794 ID=FC877794; Name=FC877794; organism=Citrus clementina; type=EST; length=804bp
ATCTAAATTAGGTGGGATCGTCCGACGTTCAGGATTAGGTCCGGCGAGAT
TCCCATTGTTGTCCACTTTAAAGATTTCAAGGCCGTTCAAGATAGCTTCA
GAGTATTTGGTCCTCCATCTGGGGGCAGGGTGCAGTTGAATAGAAAGATT
CTGCTTAATATTTTCTTCATTTGGTTTTGGTCCTATCGTCACAGCATAAT
CTCTATATACGGCAACACTATTCGCACCAGTCCAGGCTATCACATCTGCT
TGAACTTCAGCAGTTAAATTAGCAATGAAGATCTGGAACACCCTATCGCC
CTCTTCAGTTACCTCTATCTGAAACTCACAAAAATGAAACCTCAGAAAAT
ATGTAAAGCCAGAATCCACTTCGAACTCCCAAGTGAGATTATACTTCTCG
TTGATTTCCCTGTCCTGCCCCATCGTCCTGGCGGTTTTGTAGACCAGATC
TGGAGCAGAGTAATTACGTTTCCAAGTGAGATGAATACTCTGGTTAACGG
GAAGAGCACTTGGTCTGGCATCTGTCAAGTAGAGGTCGTCCATATACCAA
GTTCGGTACATGCCGCCGGTGTCGTATGACGGTTCGATATGTTTCCCGCC
GACGTTTATCCTGTATAAAGTCGCCAGAGCATTTCTGTTTAAGATACTGT
ATGGGTTGGCCTGGCCAACAAACCTGAACCCCCCGCCGGGATCGCCGGGA
TCATCGGCCGCGGTGTAATAGAAATTGAGGGGCATGGATACAATCTCAAT
TCCATTGATAAAAGCATATGAATCGTTGTAATCCGGACTTGGAGTGAAAG
TTAT
back to top