FC877799

Overview
NameFC877799
Unique NameFC877799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig403 contig Ccv1_Contig403:50..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_AERHH (Chaperone protein dnaK OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dnaK PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.714e-52
Identity = 114/224 (50.89%), Postives = 140/224 (62.50%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  D+ +  +EPV   L+DS +   ++ DV+LVGG TR+P VQ+ + DFF GKE  K +NPDE           +LSG+      D           GIET G VMT LI +NTTIPTKK Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDANGILHVSA+DK    + +ITI    G LS +EIERMV+
Sbjct:  300 VTRAKLESLVEDMVKDSLEPVRVALKDSGLAVGEIDDVILVGGQTRMPMVQKAVADFF-GKEPRKDVNPDEAVAMGAAIQGAVLSGDKT----DVLLLDVTPLSLGIETMGSVMTALIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLEGIRPAPRGLPQIEVTFDIDANGILHVSAKDKETNKEQKITIQASSG-LSDDEIERMVR 517
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SINMW (Chaperone protein dnaK OS=Sinorhizobium medicae (strain WSM419) GN=dnaK PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 113/224 (50.45%), Postives = 145/224 (64.73%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            ++RA+FE L  DL +K + P +  L+D+ +  +++ +VVLVGG TR+PKVQ+ ++  F GKE  K +NPDE           +L G+    V+D           GIET GGV T LI RNTTIPTKK Q+FST  DNQ  V I+V +GER    DN LLG+F+L GIPPAPRGVPQI V FDIDANGI+ VSA+DK  G ++QI I    G LS  EIE+MV+
Sbjct:  295 LSRAKFESLVDDLIQKTIAPCKAALKDAGVSAAEIDEVVLVGGMTRMPKVQETVKQLF-GKEPHKGVNPDEVVAMGAAIQAGVLQGD----VKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTADDNQSAVTIRVSQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDIDANGIVQVSAKDKGTGKEHQIRI-QASGGLSDAEIEKMVK 512
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SHISS (Chaperone protein dnaK OS=Shigella sonnei (strain Ss046) GN=dnaK PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  DL  + +EP++  L+D+ +  S + DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMTTLI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILHVSA+DK +G + +ITI    G L+++EI++MV+
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVR 517
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SHIFL (Chaperone protein dnaK OS=Shigella flexneri GN=dnaK PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  DL  + +EP++  L+D+ +  S + DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMTTLI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILHVSA+DK +G + +ITI    G L+++EI++MV+
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVR 517
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SHIF8 (Chaperone protein dnaK OS=Shigella flexneri serotype 5b (strain 8401) GN=dnaK PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  DL  + +EP++  L+D+ +  S + DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMTTLI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILHVSA+DK +G + +ITI    G L+++EI++MV+
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVR 517
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SHIDS (Chaperone protein dnaK OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaK PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  DL  + +EP++  L+D+ +  S + DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMTTLI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILHVSA+DK +G + +ITI    G L+++EI++MV+
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVR 517
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SHIBS (Chaperone protein dnaK OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaK PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  DL  + +EP++  L+D+ +  S + DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMTTLI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILHVSA+DK +G + +ITI    G L+++EI++MV+
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVR 517
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SALTY (Chaperone protein dnaK OS=Salmonella typhimurium GN=dnaK PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  DL  + +EP++  L+D+ +  S ++DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMT LI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILHVSA+DK +G + +ITI    G L++EEI++MV+
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVR 517
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SALTI (Chaperone protein dnaK OS=Salmonella typhi GN=dnaK PE=2 SV=3)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  DL  + +EP++  L+D+ +  S ++DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMT LI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILHVSA+DK +G + +ITI    G L++EEI++MV+
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVR 517
[Close]
BLAST of FC877799 vs. ExPASy Swiss-Prot
Match: DNAK_SALSV (Chaperone protein dnaK OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaK PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 2 
Query:   62 ITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQ 733
            +TRA+ E L  DL  + +EP++  L+D+ +  S ++DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMT LI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILHVSA+DK +G + +ITI    G L++EEI++MV+
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEEEIQKMVR 517
The following BLAST results are available for this feature:
BLAST of FC877799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_AERHH4.714e-5250.89Chaperone protein dnaK OS=Aeromonas hydrophila sub... [more]
DNAK_SINMW6.156e-5250.45Chaperone protein dnaK OS=Sinorhizobium medicae (s... [more]
DNAK_SHISS6.156e-5249.55Chaperone protein dnaK OS=Shigella sonnei (strain ... [more]
DNAK_SHIFL6.156e-5249.55Chaperone protein dnaK OS=Shigella flexneri GN=dna... [more]
DNAK_SHIF86.156e-5249.55Chaperone protein dnaK OS=Shigella flexneri seroty... [more]
DNAK_SHIDS6.156e-5249.55Chaperone protein dnaK OS=Shigella dysenteriae ser... [more]
DNAK_SHIBS6.156e-5249.55Chaperone protein dnaK OS=Shigella boydii serotype... [more]
DNAK_SALTY6.156e-5249.55Chaperone protein dnaK OS=Salmonella typhimurium G... [more]
DNAK_SALTI6.156e-5249.55Chaperone protein dnaK OS=Salmonella typhi GN=dnaK... [more]
DNAK_SALSV6.156e-5249.55Chaperone protein dnaK OS=Salmonella schwarzengrun... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AG05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877799 ID=FC877799; Name=FC877799; organism=Citrus clementina; type=EST; length=857bp
TACATCACAGACGACAATTGAGATTGATTCGCTCTATGAAGGCATTGACT
TCTATGCGACAATTACTAGGGCTAGGTTTGAAGAATTGAACATGGATTTG
TTCAGAAAATGTATGGAACCTGTGGAGAAATGTCTTCGCGACTCAAAAAT
TGATAAGAGCCAGGTTCATGATGTTGTTCTTGTTGGTGGCTCAACAAGAA
TTCCAAAAGTTCAACAATTGTTGCAAGACTTCTTTAACGGGAAGGAACTG
TGCAAGAGCATAAACCCTGATGAGGCTGTAGCTTATGGAGCTGCTGTGCA
GGCTGCTATTTTGAGCGGTGAAGGGAATGAGAAGGTTCAAGATTTGCTGC
TGCTTGATGTTACTCCTCTGAGCCTCGGTATTGAGACTGCTGGCGGTGTA
ATGACAACCTTGATTCCAAGGAACACGACAATTCCTACAAAGAAAGAGCA
AATTTTCTCAACTTATTCAGACAATCAGCCTGGTGTGTTGATTCAGGTGT
ATGAAGGTGAAAGGGCTAGAACAAAAGATAACAATCTGCTTGGGAAATTC
GAGCTCACGGGCATTCCTCCGGCACCAAGAGGTGTTCCTCAGATCAATGT
GTGCTTTGACATTGATGCTAATGGTATATTGCATGTCTCAGCAGAAGATA
AGACTGCTGGAGTGAAGAACCAGATTACAATCACCAACGATAAGGGAAGA
TTGAGCAAGGAGGAAATTGAGAGAATGGTGCAAGAGGCAGAGAAGTACAA
GGCAGAGGATGAAGAGGTAAAGAAGAAAGTAGAGGCCAAGAACTCATTGG
AGAATTATGCTTATAACATGAGGAACACTGTGAGAGATGAGAAGATTGCG
GGAAAAC
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