FC877805

Overview
NameFC877805
Unique NameFC877805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877805_ssr88 microsatellite FC877805_ssr88:88..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:40..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 81/229 (35.37%), Postives = 119/229 (51.97%), Query Frame = 1
Query:  220 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLN----RRLR-LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPL 891
            +  ++S  + + +  E+H  RF VFKANL        +D      + KF+D+T  EFR  + G      R  R  P +           +P   DWR  GAVT VKDQG CGSCW+FS   A+EG + + T +LV+LSEQ+LVDCD E         + GCNGGLM SAFE+I + GG+  E +YPY   +G       + +A ++     + ++++      V + P+
Sbjct:   40 YERWRSHHTVSRSLGEKHK-RFNVFKANLMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHPRMFRGTPHENGAFMYEKVVSVPPSVDWRKKGAVTDVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVALSEQELVDCDKE--------ENQGCNGGLMESAFEFIKQKGGITTESNYPYKAQEGTCDASKVNDLAVSIDGHENVPANDEDALLKAVANQPV 259          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 84/235 (35.74%), Postives = 122/235 (51.91%), Query Frame = 1
Query:  211 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPL 891
            +HH+ L+K  + K Y  + E   R  +++ NL+      L     +H    G+    D+T  E     + L   LR+P+  Q+     +N    LP   DWR+ G VT VK QG+CG+CW+FSA GALE    L TG+LVSLS Q LVD    C  E+ G  + GCNGG M +AF+YI+   G++ +  YPY   D   C++D    AA  S ++ +    ED +   +   GP+
Sbjct:   25 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD-QKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPV 248          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 72/230 (31.30%), Postives = 129/230 (56.09%), Query Frame = 1
Query:  220 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH-GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-----PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPL 891
            F  + +++ + Y   +E   RF++FK N++  +     +  +   G+ +F+D+T SEF  Q+ G++    LP + ++ P++  +D+     P   DWRD+GAV  VK+Q  CGSCWSF+A   +EG + + TG LVSLSEQ+++DC          +   GC GG +N A+++I+   GV  E++YPY     G+C  +    +A ++ +S +  ++++     V + P+
Sbjct:   37 FEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNENSYTLGINQFTDMTKSEFVAQYTGVS----LPLNIEREPVVSFDDVNISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDC----------AVSYGCKGGWVNKAYDFIISNNGVTTEENYPYLAYQ-GTCNANSFPNSAYITGYSYVRRNDERSMMYAVSNQPI 251          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.899e-32
Identity = 79/233 (33.91%), Postives = 128/233 (54.94%), Query Frame = 1
Query:  199 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFS-VISSDEDQMAANLVKHGPL 891
            +L A ++F  F  +++K Y ++ E   R+++F+ NL     +   D TAV+ + KFSDL+  E   ++ GL+  L      +   +  P    P +FDWR    +T VK+QG CG+CW+F+   +LE    ++   L++LSEQQ++DCD         S D GC GGL+++AFE I+  GGV+ E DYPY  ++   C+ D +K    V   +  I+  E+++   L   GP+
Sbjct:   21 ILKAPNYFEEFVRQYNKQYDSEYEKLRRYKIFQHNLNDIITKNRND-TAVYKINKFSDLSKDETIAKYTGLSLPLHTQNFCEVVVLDRPPGKGPLEFDWRRFNKITSVKNQGMCGACWAFATLASLESQFAIAHDRLINLSEQQMIDCD---------SVDVGCEGGLLHTAFEAIISMGGVQIENDYPYESSN-NYCRMDPTKFVVGVKQCNRYITIYEEKLKDVLRLAGPI 242          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.293e-31
Identity = 80/241 (33.20%), Postives = 128/241 (53.11%), Query Frame = 1
Query:  205 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-NRRLRL----------PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPL 891
            +A  +F  F ++++K Y +++E  YR+ +F+ N+    ++   + +AV+ + +F+D+  +E   +  GL +  L L          PA  Q+         P  FDWR    +T VKDQG CG+CW F++ GALE  + +    L+ LSEQQLVDCD           D GC+GGL+++A+E I+K GGVE+E DY Y   +   C     K A  V N +  +  +E+++   L   GP+
Sbjct:   35 SAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASGELGLNFCETIVVDGPAQRQR---------PVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYK-AERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPI 256          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.205e-31
Identity = 86/235 (36.60%), Postives = 120/235 (51.06%), Query Frame = 1
Query:  211 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPL 891
            +HH+ L+K    +    Q E D R  +++ NL+      L     +H    G+    D+TP E     +G    LR+P    ++  L ++    LP   DWR+ G VT VK QG+CGSCW+FSA GALEG   L TG+LVSLS Q LVDC  E   E+ G  + GC GG M  AF+YI+    ++ E  YPY   D   C +D    AA  S +  +   DE+ +   +   GP+
Sbjct:   23 DHHWDLWKKTRMRRNTDQNEEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEV----IGYMGSLRIPRPWNRSGTLKSSSNQTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTE---EKYG--NKGCGGGFMTEAFQYIIDT-SIDSEASYPYKAMD-EKCLYDPKNRAATCSRYIELPFGDEEALKEAVATKGPV 246          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.205e-31
Identity = 83/232 (35.78%), Postives = 118/232 (50.86%), Query Frame = 1
Query:  211 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPL 891
            ++H+ L+K    K Y  + E + R  +++ NL+      L     +H    G+    D+T  E   + +G  R  R               LP   DWR+ G VT VK QG+CG+CW+FSA GALEG   L TG+L+SLS Q LVDC +E   E+ G  + GC GG M  AF+YI+  GG+E +  YPY  TD   C ++    AA  S +  +   DED +   +   GP+
Sbjct:   33 DYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCR-MGALRISRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNE---EKYG--NKGCGGGYMTEAFQYIIDNGGIEADASYPYKATD-EKCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPV 257          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.761e-31
Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 1
Query:  220 FSLFKSKFSKTYATQEEHDYRFRVFKAN---LRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFL----GLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF-SVISSDE 852
            F L+KS+  + Y   EE   R  +FK N   +R     +    +   G+ KF+D+TP EF +++L     +++++++     K      +  P  +DWR  G +T VK QG CG  W+FSATGA+E AH ++TG+LVSLSEQ+LVDC  E +         G   G    +FE++L+ GG+  + DYPY   + G CK +K +    +  + ++I SDE
Sbjct:   44 FQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESE---------GSYNGWQYQSFEWVLEHGGIATDDDYPYRAKE-GRCKANKIQDKVTIDGYETLIMSDE 252          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.761e-31
Identity = 83/228 (36.40%), Postives = 127/228 (55.70%), Query Frame = 1
Query:  217 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHG-AVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPL 891
            HF  +  +  KTY++ E +++R ++F  N R+ +     + T    + +FSD++ +E + +FL    +      A K+  L  T   P+  DWR  G  V+ VK+QGAC SCW+FS TGALE A  +++G+++SL+EQQLVDC    +       + GC GGL + AFEYIL   G+  E  YPY G D  SC+F+  K  A V N  ++  +DE  M   +  + P+
Sbjct:   32 HFKSWMKQHQKTYSSVE-YNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQ---NCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFN-------NHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKD-SSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPV 247          
BLAST of FC877805 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.761e-31
Identity = 83/223 (37.22%), Postives = 118/223 (52.91%), Query Frame = 1
Query:  220 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAV---SNFSVISSDEDQMAANLVK 879
            F+ F  ++ K+Y +  E   RFR+F  +L   +           G+ +FSD++  EF+   LG  +       A    +     LP   DWR+ G V+ VK+Q  CGSCW+FS TGALE A+  +TG+ +SLSEQQLVDC         G  + GCNGGL + AFEYI   GG++ E+ YPY G + G C +     A  V    N ++ + DE + A  LV+
Sbjct:   61 FARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATL-AGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDC-------AGGFNNFGCNGGLPSQAFEYIKYNGGIDTEESYPYKGVN-GVCHYKAENAAVQVLDSVNITLNAEDELKNAVGLVR 274          
The following BLAST results are available for this feature:
BLAST of FC877805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CYSEP_PHAVU7.579e-3235.37Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]
CATS_HUMAN7.579e-3235.74Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
BROM1_ANACO7.579e-3231.30Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CATV_NPVEP9.899e-3233.91Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CATV_NPVSE1.293e-3133.20Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATS_RAT2.205e-3136.60Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATS_MOUSE2.205e-3135.78Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
P34_SOYBN3.761e-3135.16P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CATH_MOUSE3.761e-3136.40Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
ALEU_HORVU3.761e-3137.22Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA24CC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877805 ID=FC877805; Name=FC877805; organism=Citrus clementina; type=EST; length=893bp
TCTTTTTGGAAACATTTCTTATCTGCTTCATCCTTCTTCGCAGTCCACTG
AAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTCCTCCTCCTCC
TCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGGCGACGATGCT
ATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCGAAGATCATCT
CCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTCTCCAAGA
CTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCT
AACCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCA
CGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGT
TCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAAGGCT
CCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCA
CGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGT
CGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGC
GAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAGTG
TGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCTAA
TGAACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGAGAG
AAGGACTACCCTTACACTGGGACCGACGGTGGTTCCTGCAAATTTGACAA
AAGCAAAATTGCTGCAGCTGTATCTAATTTCAGTGTTATTTCCTCTGATG
AAGATCAAATGGCTGCAAATTTGGTGAAACATGGCCCTCTGGC
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