FC877813

Overview
NameFC877813
Unique NameFC877813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C76C3_ARATH (Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 58/235 (24.68%), Postives = 103/235 (43.83%), Query Frame = 1
Query:  121 SLPFIFVSIFCFFLAPGGLAWALYKSRFSTQTRTAIPGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSS--AFADRPVKESAYELLFHR-AIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHF 816
            SLP  F+    FF       +A  K+R S+ T T  PGP  LP++G +    G   HR LA  + ++   P+M+  +G    V+ S P+ AKE L +     + R   ++      H+ +I + P    WR L++    +L SP+ +  +   R     ++V  +    E+  A+++ +     S N +  ++F       +   Y  +  S+E    V    ++ G  N  D+F
Sbjct:   10 SLPLYFLLTLFFFF------FATAKTRRSSSTGTLPPGPPILPLVGNIFQL-GFNPHRSLAAFSKTYG--PIMSLKLGRLTAVVISSPEAAKEALRTHDHVMSARTFNDALRAFDHHKHSIVWIPPSARWRFLKKTITKYLLSPQNLDAIQSLRMRKVEELVSLVNEFRERGEAIDLARASFVTSFNIISNALFS-----VDLATYDSNSSSYEFHNTVVHLTDIAGIPNVGDYF 230          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C71BC_ARATH (Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=CYP71B12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 53/200 (26.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:  229 PGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSSAF--ADRPVKESAYELLFH-RAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            PGP  LPI+G  L   GS  HR + KL+ ++   PLM+   G    V++S P+T KE+L +       RP       + ++ + + F+P+ +YWR +R+++   L++ KR+      R+     +V  I+        V + K L   S + +    FG + +  +  N +++        +++   EL+G+F  +D+FP
Sbjct:   31 PGPPRLPIIGN-LHQLGSKPHRSMFKLSETYG--PLMSLKFGSVSTVVASTPETVKEVLKTFDVECCSRPNMTYPARVTYNLKDLCFSPYSKYWREVRKMTVVELYTAKRVQSFQHTRKEEVAALVDFIKQAASLEKPVNLNKKLMKLSGSVICRVAFGINLQGSKLENTYEE--------VIQGTVELVGSFAAADYFP 219          
The following BLAST results are available for this feature:
BLAST of FC877813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
C76C3_ARATH8.444e-1124.68Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CY... [more]
C71BC_ARATH8.444e-1126.50Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877813 ID=FC877813; Name=FC877813; organism=Citrus clementina; type=EST; length=819bp
CAATATCATAAATACCCCTCAGAAAATCACTTATTTGTCTTTAAAAATCA
TCTTTTTTAATCTTAAGCAAACATGACTGCTGATCAGTATTTTCTTCCCT
TTGTTTTTTCAACAGCTGGTTCCTTACCATTTATCTTTGTCTCAATTTTC
TGTTTCTTCTTGGCACCCGGTGGCTTGGCTTGGGCTCTTTACAAAAGCCG
GTTCAGTACCCAAACCCGAACGGCCATTCCCGGTCCCTCCGGTCTCCCCA
TTCTTGGCATGGTTCTAGCTTTCACCGGCTCTCTGACTCATAGAGTCCTT
GCCAAGCTGGCTGTGTCTTTCCGGGCCAAGCCATTGATGGCTTTCTCCGT
TGGGTTCACTCGTTTCGTCATATCAAGCCACCCCGATACAGCCAAAGAGA
TTCTTAACAGCTCAGCTTTCGCTGATCGCCCCGTTAAGGAATCGGCTTAT
GAACTTTTGTTTCATAGGGCAATTGGGTTTGCTCCCTTTGGCGAGTACTG
GAGGAACCTGAGGAGAATCTCAGGTACGCATTTGTTTAGTCCCAAGAGAA
TGAGTGTTCTTGGGAAATTTCGCGAGACTGTTGGGCTAAAAATGGTGAAA
GAAATTAGGGTTTTGATGGAGAAAAACGGAGCCGTTGAAGTGAGAAAAGT
GTTGCATTTTGGGTCACTGAACAGTGTGATGATGAGTGTGTTTGGAAGGA
GTTATGAGTTTGGTGAAAAGTGCAATTATCATGATGATGATGGGAGTCAT
GAACTTGAGGGTTTGGTGAGGGAAGGGTATGAGTTGCTTGGGACCTTTAA
CTGGAGTGACCATTTTCCT
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