FC877818

Overview
NameFC877818
Unique NameFC877818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877818_ssr781 microsatellite FC877818_ssr781:781..801. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6012 contig Ccv1_Contig6012:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71DI_MENSP (Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 62/193 (32.12%), Postives = 110/193 (56.99%), Query Frame = 2
Query:  206 LAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWINARGFYK-RMARARESLDGFIDSIIDEH 778
            +A+KYG + H+Q+G ++ V +S+ + AK+ ++  D  FA+R   +    + YD+ D+ F+ Y   WRQMR+ICV +L S +   S+  +R EE++  ++ + ++ G+ V++ E V  ++  +  RAAFGS   D Q    ++++E   L   F +AD +P    +N     K R+ R R  LD  +D  ++EH
Sbjct:   62 IAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDGIGSRTMWYDKDDIIFSPYNDHWRQMRRICVTELLSPKNVRSFGYIRQEEIERLIRLLGSSGGAPVDVTEEVSKMSCVVVCRAAFGSVLKD-QGSLAELVKESLALASGFELADLYPSSWLLNLLSLNKYRLQRMRRRLDHILDGFLEEH 253          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71DI_MENGR (Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 62/193 (32.12%), Postives = 110/193 (56.99%), Query Frame = 2
Query:  206 LAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWINARGFYK-RMARARESLDGFIDSIIDEH 778
            +A+KYG + H+Q+G ++ V +S+ + AK+ ++  D  FA+R   +    + YD+ D+ F+ Y   WRQMR+ICV +L S +   S+  +R EE++  ++ + ++ G+ V++ E V  ++  +  RAAFGS   D Q    ++++E   L   F +AD +P    +N     K R+ R R  LD  +D  ++EH
Sbjct:   62 IAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDGIGSRTMWYDKDDIIFSPYNDHWRQMRRICVTELLSPKNVRSFGYIRQEEIERLIRLLGSSGGAPVDVTEEVSKMSCVVVCRAAFGSVLKD-QGSLAELVKESLALASGFELADLYPSSWLLNLLSLNKYRLQRMRRRLDHILDGFLEEH 253          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71B5_ARATH (Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CYP71B5 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 67/216 (31.02%), Postives = 115/216 (53.24%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVREEVDSTL-----QTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHD--GQDEFVKILQEFSKLFGAFNIADFFPWMGWINAR--GFYKRMARARESLDGFIDSIIDEHM 781
            N+    +  H+ L  ++++YG ++ L  G + V+ VS+ + A+EVL+  DL   +RP  V     TY+  D+ FA YG  WR+MRKI V +LFS+++ +S+  +RE+    L     ++ + T  S VN+ +++F    +I  R +FG    D    +   +++ E     G+   ADF P  GWI  R  G +  + +A   L  F + +ID+H+
Sbjct:   40 NLHQFGRFLHKSLHKISQEYGPVMLLHFGVVPVIIVSSKEGAEEVLKTHDLETCSRPKTVGSGLFTYNFKDIGFAPYGENWREMRKIAVSELFSQKKLKSFRYIREDESQLLVRKVSKSALETPTSSVNLRKVIFTFAASIICRLSFGQNFCDFVDMETVEELVLESETNLGSLAFADFLP-AGWIIDRISGQHSTVMKAFSKLTNFFELVIDDHL 254          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 64/213 (30.05%), Postives = 108/213 (50.70%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVREEVDSTLQTVM---NTTGSKVNIGELVFALTRNITYRAAFGS--FSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWIN-ARGFYKRMARARESLDGFIDSIIDEHM 781
            N+  +    HR L  L+ +YG L+ L  G + V+ VS PD+  ++++  DL FANRP + AI        D+ F  YG  W+ M+ + V+ L + +   S+ ++REE    +   +   +++ S VN+ +L+  LT +I  R   G      +G  +   ++   S+ FG F   DF P + WI+   G   +M      LD F+DS++ EH+
Sbjct:   45 NLHQLGPNPHRYLHSLSLRYGPLMLLHFGRVPVLVVSCPDVTNDIMKTHDLKFANRPKSKAINIFMEGGRDIIFGPYGEDWKSMKSLGVVHLLNNKMVRSFENLREEEIKVMTEKLEEASSSSSSVNLSKLLMTLTNDIICRITLGRKYNEEEGGIDIKNLVMTSSEFFGKFFFGDFIPSLAWIDWISGIDDKMKDINNKLDCFLDSMVQEHV 257          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71AI_ARATH (Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=CYP71A18 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 61/213 (28.64%), Postives = 112/213 (52.58%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTV--MNTTGSKVNIGELVFALTRNITYRAAFGS--FSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWIN-ARGFYKRMARARESLDGFIDSIIDEHM 781
            N+  +    HR L  L+ +YG L+ L  G + ++ VS+ + A E+L+  DL FANRP + A+  L     D+ F  YG +WRQM+ +C++ L + +   S+  VR EEV++ ++ +   + + S  N+ EL   LT ++T R + G   +  +      K +++  +L   F I D+ P + WI+   GF  ++     +    ++ ++ EH+
Sbjct:   45 NLHQLSLHPHRSLHSLSLRYGPLMLLHFGRVPILVVSSSEAAHEILKTHDLKFANRPKSKAVHGLMNGGRDVVFGPYGEYWRQMKSVCILNLLTNKMVASFEKVREEEVNAMMEKLEKASCSSSAENLSELFVTLTSDVTSRVSLGKKYWEDETAGGLKKRVRQIMELLREFPIGDYVPALAWIDRINGFNSKIVEVSRAYSDLMEKVVQEHL 257          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C99A3_ORYSJ (Cytochrome P450 99A3 OS=Oryza sativa subsp. japonica GN=CYP99A3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.597e-24
Identity = 65/196 (33.16%), Postives = 105/196 (53.57%), Query Frame = 2
Query:  197 LADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVRE-EVDSTLQTVMNTTGSK--VNIGELVFALTRNITYRAAFG-SFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWINA-RGFYKRMARARESLDGFIDSII 769
            L DLA KYG ++ L+ G +  V +S+P  A+EVL+ +D+ FA+RP+ +      Y   D+ FA YG +WR +RK+C ++L S +     A +R+ E  + ++ +    G K    +  L+ + T   T +AAFG +   + Q++F+  L E  K    F   D FP + +I+A  G   R+ R R  LD   D I+
Sbjct:   60 LRDLAGKYGPVMFLRTGQVDTVVISSPAAAQEVLRDKDVTFASRPSLLVSEIFCYGNLDIGFAPYGAYWRMLRKLCTVELLSTKMVRQLAPIRDGETLALVRNIEAAAGGKKPFTLATLLISCTNTFTAKAAFGQACGGELQEQFLTALDEALKFSNGFCFGDLFPSLRFIDAMTGLRSRLERLRLQLDTVFDKIV 255          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C7D94_MENGR (Cytochrome P450 71D94 OS=Mentha gracilis GN=CYP71D94 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.692e-23
Identity = 61/196 (31.12%), Postives = 108/196 (55.10%), Query Frame = 2
Query:  197 LADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWINARGFYK-RMARARESLDGFIDSIIDEH 778
            L  +A++YG + H+Q+G ++ V +S+ + AK+ ++  D  FA+R  +V    + YD  D+ F+ Y   W QMRKICV +L S +   S+  +R EE++  ++ +  + G+ V++ E V  ++  +  RAAFGS   D Q    ++++E   +   F + D +P    +N   F   R+ R R  LD  +D  ++EH
Sbjct:   57 LRSIAREYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDSVGSRIMWYDNDDIIFSPYNDHWHQMRKICVSELLSPKNVRSFGFIRQEEIERLIRVMKQSEGAPVDVTEEVSKMSCFVVCRAAFGSVLKD-QGSLAELVKESLAMASGFELKDLYPSSWLLNLLSFNNYRLKRMRRRLDHVLDGFLEEH 251          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71BC_ARATH (Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=CYP71B12 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.924e-23
Identity = 61/214 (28.50%), Postives = 115/214 (53.74%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVREEVDSTLQTVMNTTGS---KVNIGELVFALTRNITYRAAFGSFSHDG--QDEFVKILQEFSKLFGAFNIADFFPWMGWINAR--GFYKRMARARESLDGFIDSIIDEHM 781
            N+  +    HR +  L++ YG L+ L+ G++  V  STP+  KEVL+  D+   +RP       +TY+  D+ F+ Y  +WR++RK+ V++L++ +R +S+   R+E  + L   +    S    VN+ + +  L+ ++  R AFG        ++ + +++Q   +L G+F  AD+FP +G I  R  G + +  +  +++D F D  I  H+
Sbjct:   41 NLHQLGSKPHRSMFKLSETYGPLMSLKFGSVSTVVASTPETVKEVLKTFDVECCSRPNMTYPARVTYNLKDLCFSPYSKYWREVRKMTVVELYTAKRVQSFQHTRKEEVAALVDFIKQAASLEKPVNLNKKLMKLSGSVICRVAFGINLQGSKLENTYEEVIQGTVELVGSFAAADYFPVVGRIIDRITGLHSKCEKLFKAMDAFFDQSIKHHL 254          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C82A3_SOYBN (Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.399e-23
Identity = 67/218 (30.73%), Postives = 116/218 (53.21%), Query Frame = 2
Query:  179 QLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMN--TTGSK-------VNIGELVFALTRNITYRAA-----FGSFSHDGQDE---FVKILQEFSKLFGAFNIADFFPWMGWINARGFYKRMARARESLDGFIDSIIDEH 778
            Q  H+ L  LA KYG L  +++G    + +S  +M+KE+    DL  ++RP  VA+  ++Y++A +  A YGP+WR++RKI   +  S RR E    +R  EV ++++ + +  + G+K       V+I + +  LT N+  R       FG    +G+D+   F+K ++EF  L G F +AD  P + W++  G  K M    + +D  +   ++EH
Sbjct:   58 QTPHKVLGALADKYGPLFTIKLGMKPALVLSNWEMSKELFTTNDLAVSSRPKLVAVEVMSYNQAFVGLAPYGPYWRELRKIVTFEFLSNRRIEQRNHIRVSEVRTSIKELFDIWSNGNKNESRYTLVDIKQWLAYLTFNMVVRMVVGKRYFGVMHVEGKDKAQRFMKNIREFMNLMGTFTVADGVPCLRWLDLGGHEKAMKANAKEVDKLLSEWLEEH 275          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71A8_MENPI (Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.444e-22
Identity = 62/211 (29.38%), Postives = 106/211 (50.24%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVREEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFG---SFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWIN-ARGFYKRMARARESLDGFIDSIIDEHM 781
            N+  +  L H  L  +A+K+G ++ L +G++  V+               L    RP       L   +       YG +WRQ++ ICV++L S +R +S+ SVREE    L   +  +   VN+  +   LT ++  R+A G       +  ++F++IL+EF +L GA +I DF P + WIN   GF +R+ R  + +D F++ +I E +
Sbjct:   61 NLLQLGSLPHHNLRSMARKHGPIMLLHLGSVRPVSSRRRPRGNHENSRSRL---RRPRGSRSAAL---QLQGRVGGYGEYWRQLKTICVVQLLSNKRVQSFRSVREEETELLMKKIGDSSGNVNLSHMFTQLTNDVVCRSAIGRKYGAGDENGEKFLEILREFLELLGAISIGDFVPSLWWINRINGFDRRVDRIAKEMDEFLEKVIHERL 265          
The following BLAST results are available for this feature:
BLAST of FC877818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
C71DI_MENSP3.410e-2432.12Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D1... [more]
C71DI_MENGR3.410e-2432.12Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D... [more]
C71B5_ARATH3.410e-2431.02Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CY... [more]
C71AR_ARATH3.410e-2430.05Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]
C71AI_ARATH3.410e-2428.64Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=C... [more]
C99A3_ORYSJ7.597e-2433.16Cytochrome P450 99A3 OS=Oryza sativa subsp. japoni... [more]
C7D94_MENGR1.692e-2331.12Cytochrome P450 71D94 OS=Mentha gracilis GN=CYP71D... [more]
C71BC_ARATH4.924e-2328.50Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=C... [more]
C82A3_SOYBN8.399e-2330.73Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=... [more]
C71A8_MENPI2.444e-2229.38Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877818 ID=FC877818; Name=FC877818; organism=Citrus clementina; type=EST; length=892bp
TCGACTTACAGCCATGGATTCGCTGCTTCAAACTCTTCAATCATCACCAA
TCTTCTTCATCATTCTTCCTCTCTTACTGGCTTTCGTTCTCTTCTCATTA
ACAACCTTACGTAAAAAACTCCCATACCCTCCAGGCCCAAAAGGGTATCC
GATCATCGGCAACATGGCCATGATGGACCAACTGACTCACCGCGGCCTCG
CAGACCTTGCCAAGAAATACGGCGGCCTCCTCCATCTCCAAATGGGAGCA
ATTCATGTCGTCGCCGTATCGACGCCGGACATGGCTAAAGAAGTTCTTCA
GGCTCAAGATCTCGTCTTCGCAAACCGGCCAGCAAACGTGGCCATAACAT
ATCTAACTTACGACAGAGCCGACATGGCGTTTGCCAACTACGGACCCTTT
TGGCGACAAATGCGAAAGATCTGCGTGATTAAGCTCTTCAGCAGAAGACG
AGAGGAATCGTGGGCGTCAGTAAGAGAAGAGGTGGACTCAACATTACAAA
CAGTGATGAACACAACAGGCTCAAAAGTTAATATAGGCGAATTAGTGTTT
GCTCTAACGAGGAACATTACATATAGGGCAGCATTTGGGTCGTTTTCACA
TGATGGGCAAGATGAATTTGTGAAGATTCTGCAAGAATTTTCCAAGCTTT
TTGGGGCATTTAATATTGCCGATTTTTTTCCGTGGATGGGGTGGATTAAT
GCGAGGGGATTTTATAAGAGGATGGCTAGGGCAAGGGAGTCACTAGATGG
GTTCATTGATAGCATTATTGATGAGCACATGAAGAAGAAGAAGAAGAAGA
ATGTCCGAGATGAAGAAGGCAAAATTAATTACAATGATGGTGAAGCTGAG
GCTGAGGCTGATACTGATATGGTCGATGAATTAATGGCTTTT
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