FC877821

Overview
NameFC877821
Unique NameFC877821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length916
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC877821 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.394e-12
Identity = 73/288 (25.35%), Postives = 132/288 (45.83%), Query Frame = 2 
Query:   65 VRSLVTKLGSVSEQTXXXXXXXXXXXSKHDAEIRPMISEAGSIPYLAEIL-YSSSHAFQENAAATLLNLSIT--SRDSLMSTRGLLDAISHVLRHHXXXXXXXXXXXXXXXLHSLLVVDSYRPIIGAKRDIIHSLIEIIKTRNSPLRSVKDALKALFGIALYPLNRYQVIALGGVQPLFSLVVNGGRAGIVEDASAVIAQIAGCEESVDEFKKCCGIXXXXXXXXXXTGSGH-RVKENAVSALLNLVNFGGERAAEEVKEMAMQVADGIADVAQNGSAKGKTKAVALL 916
            +  L+ KL S   +            +K +   R  I+ +G+IP L  +L  S+    QE+A  ++LNLSI   ++  ++ + G +  I HVL+                 L SL V+D  +  IGA    I  L+ ++   +   R  KDA  ALF + ++  N+ + +  G V  L  L+     +G+V+++ +++A ++   +   E     G             SG  R KEN+ + L++L ++  +   E  K   + + D + ++A+NG+ +GK KA  LL
Sbjct:  357 IEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQK----GSMEARENAAATLFSLSVIDENKVTIGAA-GAIPPLVTLLSEGSQ--RGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEP-ESGMVDESLSILAILSSHPDGKSEV----GAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQK---LGIMDLLIEMAENGTDRGKRKAAQLL 629
The following BLAST results are available for this feature:
BLAST of FC877821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PUB12_ARATH2.394e-1225.35U-box domain-containing protein 12 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877821 ID=FC877821; Name=FC877821; organism=Citrus clementina; type=EST; length=916bp
ATTAGAAACAGAAACACAATCATAGACAGACAGTGATCCAAAAATGGTAG
TAAAGCGACGCACCGTTCGGTCGTTAGTGACCAAACTCGGTTCAGTGTCG
GAACAAACACGGGCCGAGGCTCTGGCCGAGCTGCGCCTCCTTTCAAAGCA
CGACGCCGAAATCCGTCCTATGATCTCCGAAGCTGGCTCTATCCCGTACT
TAGCCGAAATCCTTTATTCCTCCTCGCACGCATTTCAAGAAAACGCCGCC
GCCACGCTCCTGAACCTCTCAATCACCTCGCGTGACTCTCTGATGTCCAC
GCGCGGCCTCCTCGACGCCATCTCCCACGTGCTCCGCCACCACTCCACCT
CCACCTCCTCCGCCGCCGTACAATCCTCCGCCGCTACGTTGCACAGCCTA
CTAGTCGTCGATTCTTACCGCCCGATCATCGGTGCCAAGCGCGATATCAT
TCACTCTCTCATTGAAATCATAAAAACGCGTAACTCACCGCTGCGTTCTG
TTAAAGACGCGTTAAAAGCGCTTTTTGGAATTGCGCTTTATCCGTTAAAT
CGCTATCAAGTAATTGCGCTAGGTGGGGTCCAGCCTTTGTTTTCACTGGT
TGTGAACGGGGGAAGGGCTGGGATTGTGGAGGACGCGAGCGCAGTGATCG
CGCAAATTGCGGGATGTGAGGAAAGTGTGGACGAATTTAAGAAATGTTGT
GGAATCGGAGTGTTGGTGGATTTGTTAGATTTGGGCACGGGATCAGGTCA
TAGAGTAAAGGAGAATGCAGTGTCAGCGCTGTTGAATTTGGTGAATTTTG
GAGGGGAAAGAGCTGCAGAAGAAGTAAAAGAGATGGCGATGCAAGTAGCG
GATGGAATTGCTGATGTGGCCCAAAATGGGAGCGCAAAGGGTAAGACAAA
GGCAGTAGCGTTACTG
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