FC877822

Overview
NameFC877822
Unique NameFC877822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877822_ssr79 microsatellite FC877822_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr607 microsatellite FC877822_ssr607:607..624. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr642 microsatellite FC877822_ssr642:642..662. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:42..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.258e-29
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  263 KKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 547
            K+     ++HPVY GVR R WGKWVSEIREPRKKSRIWLG+F  PEMAA+A+DVAA  +KG  A LNFP+    LPRP++ +PRD+Q AAAKAA+
Sbjct:   33 KETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAAN 127          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.844e-27
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 2
Query:  287 KHPVYRGVRMRA-WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 547
            +HP+YRGVR R    KWVSEIREPRK +RIWLGTFSTPEMAA A+DVAAL++KG+ A LNFP    SLP P S SP D+QAAAA AA+
Sbjct:   11 RHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAA 98          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.455e-25
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 544
            +++HP+YRGVR R  GKWVSE+REP KK+RIWLGTF T EMAARAHDVAAL+++G SA LNF   A  L  P S   +D+Q AAA+AA
Sbjct:   42 ETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAA 129          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.144e-25
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 2
Query:  254 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 544
            K+  ++   +++HP+YRGVR R  GKWV E+REP KKSRIWLGTF T EMAARAHDVAAL+++G SA LNF   A  L  P +  P+++Q AA++AA
Sbjct:   39 KRAGRKKFRETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAA 135          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.219e-24
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 544
            +++HP+YRGVR R  GKWV E+REP KK+RIWLGTF T EMAARAHDVAAL+++G SA LNF   A  L  P S   +D+Q AAA+AA
Sbjct:   45 ETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAA 132          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.715e-24
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 2
Query:  287 KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 553
            K PVYRG+R R+ GKWVSEIREPRK +RIWLGT+   EMAA A+DVAA+++KG  A+LNFP   GS P P S S  D++AAAA AA+M+
Sbjct:   15 KDPVYRGIRCRS-GKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMK 102          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF25_ARATH (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.631e-24
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 2
Query:  287 KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 553
            KH ++RG+R+R  GKWVSEIREPRK +RIWLGT+  PEMAA A+DVAAL++KG  A+LNFP LA +   P S S  D++AAA++AA M+
Sbjct:   61 KHSIFRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNFPGLALTYVAPVSNSAADIRAAASRAAEMK 148          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 6.048e-24
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 544
            +++HP+YRGVR R  GKWV E+REP KK+RIWLGTF T EMAARAHDVAA++++G SA LNF   A  L  P S   +++Q AAA+AA
Sbjct:   45 ETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAA 132          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.347e-23
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  287 KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 547
            K+PVYRG+R R+ GKWVSEIREP+K +R+WLGT+ TPEMAA A+DVAAL++KG   +LNFP   GS P P S S   ++ AAA AA+
Sbjct:   86 KNPVYRGIRCRS-GKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPDSLGSYPIPLSSSAAHIRCAAAAAAA 171          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSJ (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWG-KWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKG-ASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 550
            +++HPVYRGVR RA G +WV E+REP+ ++RIWLGT+ TPEMAARAHDVAA++++G   A LNFP    +LPR  + SP D++ AAA+AA +
Sbjct:   41 ETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAEL 132          
The following BLAST results are available for this feature:
BLAST of FC877822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
ERF23_ARATH1.258e-2964.21Ethylene-responsive transcription factor ERF023 OS... [more]
ERF24_ARATH5.844e-2769.32Ethylene-responsive transcription factor ERF024 OS... [more]
DRE1B_ARATH2.455e-2563.64Dehydration-responsive element-binding protein 1B ... [more]
DRE1D_ARATH7.144e-2556.70Dehydration-responsive element-binding protein 1D ... [more]
DRE1A_ARATH1.219e-2462.50Dehydration-responsive element-binding protein 1A ... [more]
ERF27_ARATH2.715e-2462.92Ethylene-responsive transcription factor ERF027 OS... [more]
ERF25_ARATH4.631e-2460.67Ethylene-responsive transcription factor ERF025 OS... [more]
DRE1C_ARATH6.048e-2460.23Dehydration-responsive element-binding protein 1C ... [more]
ERF26_ARATH1.347e-2360.92Ethylene-responsive transcription factor ERF026 OS... [more]
DRE1F_ORYSJ1.760e-2357.61Dehydration-responsive element-binding protein 1F ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877822 ID=FC877822; Name=FC877822; organism=Citrus clementina; type=EST; length=919bp
CTCTACTTCCTCTCACCTCCCACTTCCCTCCCACTGAATCCCCTCCAAAA
CGCTGCGTTTTTAATTGTTTGTTTCATGCTCTCTCTCTCTTGCTCTCCAT
ATACCACAACATTATATAATGACTGAGTGGAATAGCTCGGAGGCCGACTC
GAACAACTCACCTTCGTCGTCCGGGTCGTCATCTCTGACAAACCCGCCAA
CCGGGAAACCCGTTACGTGCGACCCGGACCCGACCCCGACCCCGGATGCC
GCCAAGAAGCAGAAGAAGAGGCCGAGGGACGACAGCAAGCACCCGGTGTA
CAGAGGGGTCCGCATGCGGGCGTGGGGGAAGTGGGTATCCGAGATCCGAG
AGCCCAGGAAGAAGAGTCGGATCTGGCTGGGCACGTTCTCGACGCCCGAA
ATGGCGGCACGCGCGCACGACGTGGCAGCATTGAGCATCAAAGGCGCCTC
CGCCATTCTCAACTTCCCCAAACTGGCCGGGTCCCTGCCCCGACCCGCTT
CCAAATCCCCGCGAGACGTCCAAGCCGCAGCTGCCAAAGCCGCTTCGATG
GAAATCTTCGACAACCCATTACCCTCAATATCTCACTCGTCATCTTCATC
ATCGCTGTCGTCGTCGTCGTCGTCGCCAACGTCAACACCAACGTCGTCGT
CGTCGTCGTCGTCACCATTGGTGGTACCGAGTGACGTGTCGACAGCGACG
CCGGAGGAGCTGAGTGAGATAGTGGAGTTGCCCAGTCTCGGCGCGAGTTA
CGACGAGTCGAGCGAGTCCGGGAATGATTTCGTGTTCGTGGACTCGTCGT
GGTATGATTATAACTATGATTACAATTACTATTATAATATCGAAGAAGAA
GGAGAGTGTTTTTATTTTATGAATAATGATTTCATGCAAGTGCAAAATAG
TAGCAGTGGTGGTGCGATT
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