FC877822

Overview
NameFC877822
Unique NameFC877822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.384e-12
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 553
            YRGVR R WGK+ +EIR+P K  +R+WLGT+ T E AA A+D AA  ++G+ A LNFP   G         P  V+  A + AS E
Sbjct:  105 YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIG------LNEPEPVRVTAKRRASPE 184          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.384e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 466
            YRGVR R WGK+ +EIR+P  ++RIWLGTF T E AA A+D AA+ +KG  A+ NF
Sbjct:  105 YRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 469
            YRGVR R WGK+ +EIR+  R  +R+WLGTF+T E AARA+D AA  ++G  AILNFP
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 475
            Y GVR R WGKWV+EIREP + +++WLGTFS+   AA A+D A+ +I G SA LN P L
Sbjct:   67 YTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLPLL 125          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1A_ORYSJ (Dehydration-responsive element-binding protein 1A OS=Oryza sativa subsp. japonica GN=DREB1A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRA-WGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIK------GASAILNFPKLAGSLPRPAS-KSPRDVQAAAAKA 541
            +++HPV+RGVR R   G+WV E+R P R+  R+WLGTF T E AARAHD A L+I       G +  LNF   A  L  P S ++  DV+ A A+A
Sbjct:   45 ETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAARAHDAAMLAINAGGGGGGGACCLNFADSAWLLAVPRSYRTLADVRHAVAEA 140          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1A_ORYSI (Dehydration-responsive element-binding protein 1A OS=Oryza sativa subsp. indica GN=DREB1A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRA-WGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIK------GASAILNFPKLAGSLPRPAS-KSPRDVQAAAAKA 541
            +++HPV+RGVR R   G+WV E+R P R+  R+WLGTF T E AARAHD A L+I       G +  LNF   A  L  P S ++  DV+ A A+A
Sbjct:   45 ETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAARAHDAAMLAINAGGGGGGGACCLNFADSAWLLAVPRSYRTLADVRHAVAEA 140          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  272 PRDDSKHPV------YRGVRMRAWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 469
            PR++   P+      YRGVR R WGK+ +EIR+  R  +R+WLGTF T E AA A+D AA  ++GA A+LNFP
Sbjct:   44 PRNNILRPLQCIGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 466
            ++ +  YRGVR R WGKWV+EIREP +  R+WLG+F T   AA A+D AA ++ G +A +NF
Sbjct:   70 ENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 466
            ++ +  YRGVR R WGKWV+EIREP +  R+WLG+F T   AA A+D AA ++ G +A +NF
Sbjct:   70 ENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.183e-11
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 466
            YRGVR R WGK+ +EIR+P  ++R+WLGTF+T E AA  +D AA+ IKG +A  NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
The following BLAST results are available for this feature:
BLAST of FC877822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
ERF1_TOBAC2.384e-1246.51Ethylene-responsive transcription factor 1 OS=Nico... [more]
CRF6_ARATH2.384e-1258.93Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF95_ARATH4.066e-1260.34Ethylene-responsive transcription factor ERF095 OS... [more]
DRE2H_ARATH4.066e-1257.63Putative dehydration-responsive element-binding pr... [more]
DRE1A_ORYSJ4.066e-1246.88Dehydration-responsive element-binding protein 1A ... [more]
DRE1A_ORYSI4.066e-1246.88Dehydration-responsive element-binding protein 1A ... [more]
PTI5_SOLLC9.058e-1250.68Pathogenesis-related genes transcriptional activat... [more]
DRE2A_ORYSJ9.058e-1251.61Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI9.058e-1251.61Dehydration-responsive element-binding protein 2A ... [more]
CRF5_ARATH1.183e-1157.14Ethylene-responsive transcription factor CRF5 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877822 ID=FC877822; Name=FC877822; organism=Citrus clementina; type=EST; length=919bp
CTCTACTTCCTCTCACCTCCCACTTCCCTCCCACTGAATCCCCTCCAAAA
CGCTGCGTTTTTAATTGTTTGTTTCATGCTCTCTCTCTCTTGCTCTCCAT
ATACCACAACATTATATAATGACTGAGTGGAATAGCTCGGAGGCCGACTC
GAACAACTCACCTTCGTCGTCCGGGTCGTCATCTCTGACAAACCCGCCAA
CCGGGAAACCCGTTACGTGCGACCCGGACCCGACCCCGACCCCGGATGCC
GCCAAGAAGCAGAAGAAGAGGCCGAGGGACGACAGCAAGCACCCGGTGTA
CAGAGGGGTCCGCATGCGGGCGTGGGGGAAGTGGGTATCCGAGATCCGAG
AGCCCAGGAAGAAGAGTCGGATCTGGCTGGGCACGTTCTCGACGCCCGAA
ATGGCGGCACGCGCGCACGACGTGGCAGCATTGAGCATCAAAGGCGCCTC
CGCCATTCTCAACTTCCCCAAACTGGCCGGGTCCCTGCCCCGACCCGCTT
CCAAATCCCCGCGAGACGTCCAAGCCGCAGCTGCCAAAGCCGCTTCGATG
GAAATCTTCGACAACCCATTACCCTCAATATCTCACTCGTCATCTTCATC
ATCGCTGTCGTCGTCGTCGTCGTCGCCAACGTCAACACCAACGTCGTCGT
CGTCGTCGTCGTCACCATTGGTGGTACCGAGTGACGTGTCGACAGCGACG
CCGGAGGAGCTGAGTGAGATAGTGGAGTTGCCCAGTCTCGGCGCGAGTTA
CGACGAGTCGAGCGAGTCCGGGAATGATTTCGTGTTCGTGGACTCGTCGT
GGTATGATTATAACTATGATTACAATTACTATTATAATATCGAAGAAGAA
GGAGAGTGTTTTTATTTTATGAATAATGATTTCATGCAAGTGCAAAATAG
TAGCAGTGGTGGTGCGATT
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