FC877822

Overview
NameFC877822
Unique NameFC877822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877822_ssr79 microsatellite FC877822_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr607 microsatellite FC877822_ssr607:607..624. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr642 microsatellite FC877822_ssr642:642..662. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:42..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILN 463
            +RGVR R WGKWV+EIREP + +R+WLGTF+T   AA A+D AA  + G  A LN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF88_ARATH (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  248 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 466
            ++ K+K +     +   Y GVR R WG++ +EIR P  K R WLGTF T E AA A+DVAA SI G+ A  NF
Sbjct:    4 SSNKRKSKEEKKLQEGKYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNF 76          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE2E_ARATH (Dehydration-responsive element-binding protein 2E OS=Arabidopsis thaliana GN=DREB2E PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  251 AKKQKKRPRDDSKHPV--YRGVRMRAWGKWVSEIREP--------RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG 481
            +KK   R +   ++PV  +RGVR R WGKWV+EIREP         +  R+WLGTF+T   AA A+D AA  + G  A LNFP+  G
Sbjct:   52 SKKGCMRGKGGPENPVCRFRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMYGPYARLNFPEDLG 138          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 466
            YRGVR R WG++ +EIR+P  K R WLGTF T E AA A+D AA + +GA A  NF
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNF 466
            YRGVR R WGK+ +EIR+  +   R+WLGTF + E AA A+D AA S++G+SAILNF
Sbjct:   82 YRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNF 138          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG 481
            YRGVR R WGK+ +EIR+P K  +R+WLGT+ + E AA A+  AA  ++G  A+LNFP   G
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG 168          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  254 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPAS 502
            ++ + +P+   +   Y GVR R WG++ +EIR P  K R WLGTF T E AA A+D AA SI+G +A  NF  +   +PR +S
Sbjct:   24 QQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF--VYSDMPRGSS 104          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  260 QKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 466
            + K+ +DD     + GVR R WG++ +EIR+P  K R WLGTF T E AA A+D AA S++G  A  NF
Sbjct:    7 KSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
The following BLAST results are available for this feature:
BLAST of FC877822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
DRE2G_ARATH1.545e-1158.18Dehydration-responsive element-binding protein 2G ... [more]
ERF88_ARATH2.636e-1147.95Ethylene-responsive transcription factor ERF088 OS... [more]
DRE2E_ARATH2.636e-1145.98Dehydration-responsive element-binding protein 2E ... [more]
ESR1_ARATH3.442e-1157.14Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF92_ARATH4.496e-1157.89Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF1_SOLLC4.496e-1151.61Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF87_ARATH5.872e-1143.37Ethylene-responsive transcription factor ERF087 OS... [more]
LEP_ARATH7.668e-1147.83Ethylene-responsive transcription factor LEP OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877822 ID=FC877822; Name=FC877822; organism=Citrus clementina; type=EST; length=919bp
CTCTACTTCCTCTCACCTCCCACTTCCCTCCCACTGAATCCCCTCCAAAA
CGCTGCGTTTTTAATTGTTTGTTTCATGCTCTCTCTCTCTTGCTCTCCAT
ATACCACAACATTATATAATGACTGAGTGGAATAGCTCGGAGGCCGACTC
GAACAACTCACCTTCGTCGTCCGGGTCGTCATCTCTGACAAACCCGCCAA
CCGGGAAACCCGTTACGTGCGACCCGGACCCGACCCCGACCCCGGATGCC
GCCAAGAAGCAGAAGAAGAGGCCGAGGGACGACAGCAAGCACCCGGTGTA
CAGAGGGGTCCGCATGCGGGCGTGGGGGAAGTGGGTATCCGAGATCCGAG
AGCCCAGGAAGAAGAGTCGGATCTGGCTGGGCACGTTCTCGACGCCCGAA
ATGGCGGCACGCGCGCACGACGTGGCAGCATTGAGCATCAAAGGCGCCTC
CGCCATTCTCAACTTCCCCAAACTGGCCGGGTCCCTGCCCCGACCCGCTT
CCAAATCCCCGCGAGACGTCCAAGCCGCAGCTGCCAAAGCCGCTTCGATG
GAAATCTTCGACAACCCATTACCCTCAATATCTCACTCGTCATCTTCATC
ATCGCTGTCGTCGTCGTCGTCGTCGCCAACGTCAACACCAACGTCGTCGT
CGTCGTCGTCGTCACCATTGGTGGTACCGAGTGACGTGTCGACAGCGACG
CCGGAGGAGCTGAGTGAGATAGTGGAGTTGCCCAGTCTCGGCGCGAGTTA
CGACGAGTCGAGCGAGTCCGGGAATGATTTCGTGTTCGTGGACTCGTCGT
GGTATGATTATAACTATGATTACAATTACTATTATAATATCGAAGAAGAA
GGAGAGTGTTTTTATTTTATGAATAATGATTTCATGCAAGTGCAAAATAG
TAGCAGTGGTGGTGCGATT
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