FC877822

Overview
NameFC877822
Unique NameFC877822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877822_ssr79 microsatellite FC877822_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr607 microsatellite FC877822_ssr607:607..624. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr642 microsatellite FC877822_ssr642:642..662. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:42..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSI (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWG-KWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKG-ASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 550
            +++HPVYRGVR RA G +WV E+REP+ ++RIWLGT+ TPEMAARAHDVAA++++G   A LNFP    +LPR  + SP D++ AAA+AA +
Sbjct:   41 ETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAEL 132          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.298e-23
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 550
            YRG+R R WGKWVSEIREP KK+RIWLG++ T EMAA A+D AAL ++G    LNFP+L  S PRP S S   +QAAA  AA M
Sbjct:   20 YRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELVDSFPRPESSSSEHIQAAAQDAALM 103          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.920e-23
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKA 541
            YRGVR R WGKWVSEIREP  K+RIWLG+F TPEMAA A+DVAA   +G  A LNFP+LA SLPRPA  S   ++ A  +A
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLPRPADSSSDSIRMAVHEA 104          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1E_ARATH (Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana GN=DREB1E PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.541e-22
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  254 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 550
            K+  +R   +++HP+YRGVR R   KWV E+REP  + R+WLGT+ T +MAARAHDVA L+++G SA LNF   A  LP PAS  P  ++  AA+AA M
Sbjct:   15 KRAGRRIFKETRHPIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAARAHDVAVLALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAEAAEM 113          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1F_ARATH (Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.334e-22
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  254 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 550
            K+  +R   +++HPVYRG+R R   KWV E+REP  + RIWLGT+ T +MAARAHDVA L+++G SA LNF   A  LP P S  P  ++  AA+AA M
Sbjct:   15 KRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGRSACLNFADSAWRLPVPESNDPDVIRRVAAEAAEM 113          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.013e-19
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  266 KRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGS-------LPRPASKSPRDVQAAAAKAAS 547
            K     SK   Y+GVRMR+WG WVSEIR P +K+RIWLG++ST E AARA+DVA L +KG  A LNFP  + S       L      SP+ +Q  AA+AA+
Sbjct:   39 KNKNKKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRVAAQAAN 139          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1G_ORYSJ (Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. japonica GN=DREB1G PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.013e-19
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPASKSPRDVQAAAAKAA 544
            +++HPV++GVR R  G+WV E+REP  K RIWLGTF T EMAARAHDVAAL+++G +A LNF      L   P   S  D++ AAA+AA
Sbjct:   49 ETRHPVFKGVRRRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAALALRGRAACLNFADSPRRLRVPPIGASHDDIRRAAAEAA 137          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1G_ORYSI (Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. indica GN=DREB1G PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.013e-19
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPASKSPRDVQAAAAKAA 544
            +++HPV++GVR R  G+WV E+REP  K RIWLGTF T EMAARAHDVAAL+++G +A LNF      L   P   S  D++ AAA+AA
Sbjct:   49 ETRHPVFKGVRRRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAALALRGRAACLNFADSPRRLRVPPIGASHDDIRRAAAEAA 137          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1C_ORYSJ (Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. japonica GN=DREB1C PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.485e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRA-WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPAS-KSPRDVQAAAAKAA 544
            +++HPVYRGVR R   G+WV E+REP KKSRIWLGTF+T E AARAHDVAAL+++G  A LNF   A  L   PA+  +P D++ AA + A
Sbjct:   28 ETRHPVYRGVRRRGPAGRWVCEVREPNKKSRIWLGTFATAEAAARAHDVAALALRGRGACLNFADSARLLRVDPATLATPDDIRRAAIELA 118          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE1C_ORYSI (Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. indica GN=DREB1C PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.485e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRA-WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPAS-KSPRDVQAAAAKAA 544
            +++HPVYRGVR R   G+WV E+REP KKSRIWLGTF+T E AARAHDVAAL+++G  A LNF   A  L   PA+  +P D++ AA + A
Sbjct:   28 ETRHPVYRGVRRRGPAGRWVCEVREPNKKSRIWLGTFATAEAAARAHDVAALALRGRGACLNFADSARLLRVDPATLATPDDIRRAAIELA 118          
The following BLAST results are available for this feature:
BLAST of FC877822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
DRE1F_ORYSI1.760e-2357.61Dehydration-responsive element-binding protein 1F ... [more]
ERF22_ARATH2.298e-2361.90Ethylene-responsive transcription factor ERF022 OS... [more]
ERF21_ARATH3.920e-2364.20Ethylene-responsive transcription factor ERF021 OS... [more]
DRE1E_ARATH2.541e-2251.52Dehydration-responsive element-binding protein 1E ... [more]
DRE1F_ARATH4.334e-2251.52Dehydration-responsive element-binding protein 1F ... [more]
ERF12_ARATH2.013e-1950.50Ethylene-responsive transcription factor ERF012 OS... [more]
DRE1G_ORYSJ2.013e-1955.06Dehydration-responsive element-binding protein 1G ... [more]
DRE1G_ORYSI2.013e-1955.06Dehydration-responsive element-binding protein 1G ... [more]
DRE1C_ORYSJ4.485e-1957.14Dehydration-responsive element-binding protein 1C ... [more]
DRE1C_ORYSI4.485e-1957.14Dehydration-responsive element-binding protein 1C ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877822 ID=FC877822; Name=FC877822; organism=Citrus clementina; type=EST; length=919bp
CTCTACTTCCTCTCACCTCCCACTTCCCTCCCACTGAATCCCCTCCAAAA
CGCTGCGTTTTTAATTGTTTGTTTCATGCTCTCTCTCTCTTGCTCTCCAT
ATACCACAACATTATATAATGACTGAGTGGAATAGCTCGGAGGCCGACTC
GAACAACTCACCTTCGTCGTCCGGGTCGTCATCTCTGACAAACCCGCCAA
CCGGGAAACCCGTTACGTGCGACCCGGACCCGACCCCGACCCCGGATGCC
GCCAAGAAGCAGAAGAAGAGGCCGAGGGACGACAGCAAGCACCCGGTGTA
CAGAGGGGTCCGCATGCGGGCGTGGGGGAAGTGGGTATCCGAGATCCGAG
AGCCCAGGAAGAAGAGTCGGATCTGGCTGGGCACGTTCTCGACGCCCGAA
ATGGCGGCACGCGCGCACGACGTGGCAGCATTGAGCATCAAAGGCGCCTC
CGCCATTCTCAACTTCCCCAAACTGGCCGGGTCCCTGCCCCGACCCGCTT
CCAAATCCCCGCGAGACGTCCAAGCCGCAGCTGCCAAAGCCGCTTCGATG
GAAATCTTCGACAACCCATTACCCTCAATATCTCACTCGTCATCTTCATC
ATCGCTGTCGTCGTCGTCGTCGTCGCCAACGTCAACACCAACGTCGTCGT
CGTCGTCGTCGTCACCATTGGTGGTACCGAGTGACGTGTCGACAGCGACG
CCGGAGGAGCTGAGTGAGATAGTGGAGTTGCCCAGTCTCGGCGCGAGTTA
CGACGAGTCGAGCGAGTCCGGGAATGATTTCGTGTTCGTGGACTCGTCGT
GGTATGATTATAACTATGATTACAATTACTATTATAATATCGAAGAAGAA
GGAGAGTGTTTTTATTTTATGAATAATGATTTCATGCAAGTGCAAAATAG
TAGCAGTGGTGGTGCGATT
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