FC877822

Overview
NameFC877822
Unique NameFC877822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877822_ssr79 microsatellite FC877822_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr607 microsatellite FC877822_ssr607:607..624. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr642 microsatellite FC877822_ssr642:642..662. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:42..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.062e-16
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK 472
            D +   YRGVR R WGKW +EIR+P+K +R+WLGTF T E AA A+D AAL  KG+ A LNFP+
Sbjct:   84 DLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPE 147          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.917e-16
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  251 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK 472
            A+K   R R +     YRG+R R WGKW +EIR+PR+ +RIWLGTF T E AARA+D AA  I+G+ A +NFP+
Sbjct:  113 AEKSANRKRKNQ----YRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPE 182          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.917e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  299 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLA 478
            YRGVR R WGKW +EIR+P+K +R+WLGTF T E AA A+D AAL  KG+ A LNFP+ A
Sbjct:   92 YRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERA 151          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.034e-15
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  293 PVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 553
            P Y GVR R WGKWV+EIR P  + RIWLG+F + E AARA D A   ++G  A  NFP     +P   S +P+ +Q  A++ A  E
Sbjct:    5 PKYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQVVASRFACEE 91          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DRE2B_ARATH (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.034e-15
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 2
Query:  281 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGS 484
            D+ H  +RGVR R WGKWV+EIREP+  +R+WLGTF T E AA A+D AA ++ G+ A LNFP+  GS
Sbjct:   72 DNSHCSFRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNFPQSVGS 139          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.350e-15
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  296 VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 469
            +YRG+R R WGKW +EIR+P K  R+WLGTF T + AARA+DVAA+ I+G  A LNFP
Sbjct:   49 LYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.764e-15
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  257 KQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL 487
            K +K  +  +   +YRGVR R WGKWV+EIR PR ++R+WLGTF T E AA A+D AA  ++G  A LNFP L   L
Sbjct:  218 KTRKVVQTTTPTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPDLKHQL 294          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.304e-15
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 2
Query:  296 VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL---AGSLP 490
            +YRGVR R WGKWV+EIR PR ++R+WLGTF T E AA A+D AA  ++G SA LNFP L    GS P
Sbjct:  142 LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSP 209          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.304e-15
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  296 VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK 472
            +YRGVR R WGKWV+EIR+PR ++R+WLGTF T E AA A+D  A  ++G SA LNFP+
Sbjct:  142 LYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPE 200          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.304e-15
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  263 KKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDN 565
            K R R + K+  YRGVR R WGK+ +EIR+P++ +R+WLGTF T E AARA+D AA+  +G  A LNFP +  +    +  +  D+ A A+ +AS+   D+
Sbjct:  125 KIRKRKNKKNG-YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASVSATDS 224          
The following BLAST results are available for this feature:
BLAST of FC877822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
EF114_ARATH6.062e-1659.38Ethylene-responsive transcription factor ERF114 OS... [more]
RA212_ARATH7.917e-1654.05Ethylene-responsive transcription factor RAP2-12 O... [more]
EF115_ARATH7.917e-1663.33Ethylene-responsive transcription factor ERF115 OS... [more]
ERF16_ARATH1.034e-1545.98Ethylene-responsive transcription factor ERF016 OS... [more]
DRE2B_ARATH1.034e-1557.35Dehydration-responsive element-binding protein 2B ... [more]
ERF71_ARATH1.350e-1562.07Ethylene-responsive transcription factor ERF071 OS... [more]
ERF62_ARATH1.764e-1551.95Ethylene-responsive transcription factor ERF062 OS... [more]
ERF55_ARATH2.304e-1560.29Ethylene-responsive transcription factor ERF055 OS... [more]
ERF54_ARATH2.304e-1561.02Ethylene-responsive transcription factor ERF054 OS... [more]
EF109_ARATH2.304e-1543.56Ethylene-responsive transcription factor ERF109 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA65DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877822 ID=FC877822; Name=FC877822; organism=Citrus clementina; type=EST; length=919bp
CTCTACTTCCTCTCACCTCCCACTTCCCTCCCACTGAATCCCCTCCAAAA
CGCTGCGTTTTTAATTGTTTGTTTCATGCTCTCTCTCTCTTGCTCTCCAT
ATACCACAACATTATATAATGACTGAGTGGAATAGCTCGGAGGCCGACTC
GAACAACTCACCTTCGTCGTCCGGGTCGTCATCTCTGACAAACCCGCCAA
CCGGGAAACCCGTTACGTGCGACCCGGACCCGACCCCGACCCCGGATGCC
GCCAAGAAGCAGAAGAAGAGGCCGAGGGACGACAGCAAGCACCCGGTGTA
CAGAGGGGTCCGCATGCGGGCGTGGGGGAAGTGGGTATCCGAGATCCGAG
AGCCCAGGAAGAAGAGTCGGATCTGGCTGGGCACGTTCTCGACGCCCGAA
ATGGCGGCACGCGCGCACGACGTGGCAGCATTGAGCATCAAAGGCGCCTC
CGCCATTCTCAACTTCCCCAAACTGGCCGGGTCCCTGCCCCGACCCGCTT
CCAAATCCCCGCGAGACGTCCAAGCCGCAGCTGCCAAAGCCGCTTCGATG
GAAATCTTCGACAACCCATTACCCTCAATATCTCACTCGTCATCTTCATC
ATCGCTGTCGTCGTCGTCGTCGTCGCCAACGTCAACACCAACGTCGTCGT
CGTCGTCGTCGTCACCATTGGTGGTACCGAGTGACGTGTCGACAGCGACG
CCGGAGGAGCTGAGTGAGATAGTGGAGTTGCCCAGTCTCGGCGCGAGTTA
CGACGAGTCGAGCGAGTCCGGGAATGATTTCGTGTTCGTGGACTCGTCGT
GGTATGATTATAACTATGATTACAATTACTATTATAATATCGAAGAAGAA
GGAGAGTGTTTTTATTTTATGAATAATGATTTCATGCAAGTGCAAAATAG
TAGCAGTGGTGGTGCGATT
back to top