FC877825 | Citrus Genome Database

Overview


Name	FC877825
Unique Name	FC877825
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	923

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: LIS1_PIG (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 59/206 (28.64%), Postives = 97/206 (47.09%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-----------------FSRVTSMAITSDGSA---LLSAGRDKVVNLWDLRDYSCKLTV 785
            +I + D      + T++G +D++  ++     KLL S      I++WD    +C+R+  GHD     +A  P+G  + +A  D+ + +W+V  G+C   F GH+  V  +   P+ D +L+ S S+D TVRVW +  K+C A L +H                  S  T       G     LLS  RDK + +WD+    C +T+
Sbjct:  131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 57/205 (27.80%), Postives = 92/205 (44.88%), Query Frame = 3

Query:  264 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIK 878
            K  + G    +T +   P   ++ S+     I+VWD  T    R+ KGH      ++   SG LLA+  AD  + +WD  G  C     GH   VSS+   P+ D   + S + D T+++W++    CV T   H   V  +    DG+ + S   D+ V +W +    CK  +  +E V    +  P S++ S S +   +T K
Sbjct:  101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDH--IVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303

HSP 3 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 50/213 (23.47%), Postives = 92/213 (43.19%), Query Frame = 3

Query:  183 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-----------------GPAIGMACHPSGG---LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            ++ +    ++ A  ++I + ++       T  G  + +  +  + D  L+ S  + + +RVW ++T +C    + H+                   A G     SG     L +   D+ + +WDV  G C     GH   V  +LFH  +    + S +DD T+RVWD   K+C+ TL+ H   VTS+        +++   D+ V +W+ R
Sbjct:  200 IMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: LIS1_PANTR (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan troglodytes GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 59/206 (28.64%), Postives = 97/206 (47.09%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-----------------FSRVTSMAITSDGSA---LLSAGRDKVVNLWDLRDYSCKLTV 785
            +I + D      + T++G +D++  ++     KLL S      I++WD    +C+R+  GHD     +A  P+G  + +A  D+ + +W+V  G+C   F GH+  V  +   P+ D +L+ S S+D TVRVW +  K+C A L +H                  S  T       G     LLS  RDK + +WD+    C +T+
Sbjct:  131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 98.2117 bits (243), Expect = 6.956e-20
Identity = 58/205 (28.29%), Postives = 92/205 (44.88%), Query Frame = 3

Query:  264 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIK 878
            K  + G    +T +   P   ++ S+     I+VWD  T    R+ KGH      ++   SG LLA+  AD  + +WD  G  C     GH   VSS+   P+ D   + S S D T+++W++    CV T   H   V  +    DG+ + S   D+ V +W +    CK  +  +E V    +  P S++ S S +   +T K
Sbjct:  101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303

HSP 3 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 49/213 (23.00%), Postives = 92/213 (43.19%), Query Frame = 3

Query:  183 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-----------------GPAIGMACHPSGG---LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            ++ +    ++ +  ++I + ++       T  G  + +  +  + D  L+ S  + + +RVW ++T +C    + H+                   A G     SG     L +   D+ + +WDV  G C     GH   V  +LFH  +    + S +DD T+RVWD   K+C+ TL+ H   VTS+        +++   D+ V +W+ R
Sbjct:  200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGFVDQTVKVWECR 410

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 59/206 (28.64%), Postives = 97/206 (47.09%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-----------------FSRVTSMAITSDGSA---LLSAGRDKVVNLWDLRDYSCKLTV 785
            +I + D      + T++G +D++  ++     KLL S      I++WD    +C+R+  GHD     +A  P+G  + +A  D+ + +W+V  G+C   F GH+  V  +   P+ D +L+ S S+D TVRVW +  K+C A L +H                  S  T       G     LLS  RDK + +WD+    C +T+
Sbjct:  131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 98.2117 bits (243), Expect = 6.956e-20
Identity = 58/205 (28.29%), Postives = 92/205 (44.88%), Query Frame = 3

Query:  264 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIK 878
            K  + G    +T +   P   ++ S+     I+VWD  T    R+ KGH      ++   SG LLA+  AD  + +WD  G  C     GH   VSS+   P+ D   + S S D T+++W++    CV T   H   V  +    DG+ + S   D+ V +W +    CK  +  +E V    +  P S++ S S +   +T K
Sbjct:  101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303

HSP 3 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 49/213 (23.00%), Postives = 92/213 (43.19%), Query Frame = 3

Query:  183 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-----------------GPAIGMACHPSGG---LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            ++ +    ++ +  ++I + ++       T  G  + +  +  + D  L+ S  + + +RVW ++T +C    + H+                   A G     SG     L +   D+ + +WDV  G C     GH   V  +LFH  +    + S +DD T+RVWD   K+C+ TL+ H   VTS+        +++   D+ V +W+ R
Sbjct:  200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 59/206 (28.64%), Postives = 97/206 (47.09%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-----------------FSRVTSMAITSDGSA---LLSAGRDKVVNLWDLRDYSCKLTV 785
            +I + D      + T++G +D++  ++     KLL S      I++WD    +C+R+  GHD     +A  P+G  + +A  D+ + +W+V  G+C   F GH+  V  +   P+ D +L+ S S+D TVRVW +  K+C A L +H                  S  T       G     LLS  RDK + +WD+    C +T+
Sbjct:  131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 98.2117 bits (243), Expect = 6.956e-20
Identity = 58/205 (28.29%), Postives = 92/205 (44.88%), Query Frame = 3

Query:  264 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIK 878
            K  + G    +T +   P   ++ S+     I+VWD  T    R+ KGH      ++   SG LLA+  AD  + +WD  G  C     GH   VSS+   P+ D   + S S D T+++W++    CV T   H   V  +    DG+ + S   D+ V +W +    CK  +  +E V    +  P S++ S S +   +T K
Sbjct:  101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303

HSP 3 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 49/213 (23.00%), Postives = 92/213 (43.19%), Query Frame = 3

Query:  183 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-----------------GPAIGMACHPSGG---LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            ++ +    ++ +  ++I + ++       T  G  + +  +  + D  L+ S  + + +RVW ++T +C    + H+                   A G     SG     L +   D+ + +WDV  G C     GH   V  +LFH  +    + S +DD T+RVWD   K+C+ TL+ H   VTS+        +++   D+ V +W+ R
Sbjct:  200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 59/206 (28.64%), Postives = 102/206 (49.51%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH--------FSRVTSMAITSD------------GSALLSAGRDKVVNLWDLRDYSCKLTV 785
            +I + D      + T++G +D++  ++     KLL S      I++WD    +C+R+  GHD     +A  P+G  + +A  D+ + +W+V  G+C   F GH+  V  +   P+ D +L+ S S+D TVRVW +  K+C A L +H        ++  +S +  S+            G  LLS  RDK + +WD+    C +T+
Sbjct:  131 TIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTL 334

HSP 2 Score: 95.9005 bits (237), Expect = 3.452e-19
Identity = 56/205 (27.32%), Postives = 92/205 (44.88%), Query Frame = 3

Query:  264 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIK 878
            K  + G    +T +   P   ++ S+     I+VWD  T    R+ KGH      ++   +G LLA+  AD  + +WD  G  C     GH   VSS+   P+ D   + S S D T+++W++    CV T   H   V  +    DG+ + S   D+ V +W +    CK  +  +E V    +  P S++ + S +   +T K
Sbjct:  101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKK 303

HSP 3 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 48/213 (22.54%), Postives = 92/213 (43.19%), Query Frame = 3

Query:  183 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-----------------GPAIGMACHPSGG---LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            ++ +    ++ +  ++I + ++       T  G  + +  +  + D  L+ S  + + +RVW ++T +C    + H+                   A G     SG     L +   D+ + +WD+  G C     GH   V  +LFH  +    + S +DD T+RVWD   K+C+ TL+ H   VTS+        +++   D+ V +W+ R
Sbjct:  200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDFKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 59/206 (28.64%), Postives = 97/206 (47.09%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-----------------FSRVTSMAITSDGSA---LLSAGRDKVVNLWDLRDYSCKLTV 785
            +I + D      + T++G +D++  ++     KLL S      I++WD    +C+R+  GHD     +A  P+G  + +A  D+ + +W+V  G+C   F GH+  V  +   P+ D +L+ S S+D TVRVW +  K+C A L +H                  S  T       G     LLS  RDK + +WD+    C +T+
Sbjct:  131 TIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 98.2117 bits (243), Expect = 6.956e-20
Identity = 58/205 (28.29%), Postives = 92/205 (44.88%), Query Frame = 3

Query:  264 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIK 878
            K  + G    +T +   P   ++ S+     I+VWD  T    R+ KGH      ++   SG LLA+  AD  + +WD  G  C     GH   VSS+   P+ D   + S S D T+++W++    CV T   H   V  +    DG+ + S   D+ V +W +    CK  +  +E V    +  P S++ S S +   +T K
Sbjct:  101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303

HSP 3 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 49/213 (23.00%), Postives = 92/213 (43.19%), Query Frame = 3

Query:  183 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-----------------GPAIGMACHPSGG---LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            ++ +    ++ +  ++I + ++       T  G  + +  +  + D  L+ S  + + +RVW ++T +C    + H+                   A G     SG     L +   D+ + +WDV  G C     GH   V  +LFH  +    + S +DD T+RVWD   K+C+ TL+ H   VTS+        +++   D+ V +W+ R
Sbjct:  200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 2.554e-22
Identity = 60/206 (29.13%), Postives = 96/206 (46.60%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-----------------FSRVTSMAITSDGSA---LLSAGRDKVVNLWDLRDYSCKLTV 785
            +I + D      + T++G +D+I  +      KLL S      I++WD    +C+R+  GHD     +A  P+G  + +A  D+ + +W+V  G+C   F GH+  V  +   P+ D +L+ S S+D TVRVW +  K+C A L +H                  S  T       G     LLS  RDK + +WD+    C +T+
Sbjct:  131 TIKVWDYETGDFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

HSP 2 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 58/205 (28.29%), Postives = 91/205 (44.39%), Query Frame = 3

Query:  264 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIK 878
            K  + G    +T +   P   ++ S+     I+VWD  T    R+ KGH      +    SG LLA+  AD  + +WD  G  C     GH   VSS+   P+ D   + S S D T+++W++    CV T   H   V  +    DG+ + S   D+ V +W +    CK  +  +E V    +  P S++ S S +   +T K
Sbjct:  101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303

HSP 3 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 49/213 (23.00%), Postives = 92/213 (43.19%), Query Frame = 3

Query:  183 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-----------------GPAIGMACHPSGG---LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            ++ +    ++ +  ++I + ++       T  G  + +  +  + D  L+ S  + + +RVW ++T +C    + H+                   A G     SG     L +   D+ + +WDV  G C     GH   V  +LFH  +    + S +DD T+RVWD   K+C+ TL+ H   VTS+        +++   D+ V +W+ R
Sbjct:  200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.691e-22
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = 3

Query:  270 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDL 758
            T+ G S T+ + + SPD+K L S    + +R+W + T   L S+KGH+ P   ++  P G   ATA  D+   +W  D  +    F GH   V  + FHP  +   +F+GS D T R+WD+     V     H + V S+A+  DG  L +   D ++N+WD+
Sbjct:  520 TLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHP--NGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDI 680

HSP 2 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 3

Query:  279 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 632
            G  + +  ++  P+   +F+    +  R+WD+ST   +R + GH  P I +A  P G  L+T   D  + VWD+  G      +GH K  + S+ +    + ++L SG  D TVRVWDL
Sbjct:  607 GHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSY--SKEGNVLISGGADHTVRVWDL 723

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: PRP46_SCHPO (Pre-mRNA-splicing factor prp46 OS=Schizosaccharomyces pombe GN=prp5 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.432e-22
Identity = 61/182 (33.52%), Postives = 90/182 (49.45%), Query Frame = 3

Query:  204 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL---FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKV 740
            F   A   +I I DL++  +K T+ G   T+  LA+SP    LFS G  + ++ WDL T K +R + GH      +  HP+  +L TAG D    VWD+      H   GHK  V+S+    F P      + +GS D+T+R+WDL A K + TL  H   V ++++  D     S   D +
Sbjct:  178 FCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVWDMRTRQNVHVLSGHKSTVASLAVQEFDPQ-----VVTGSMDSTIRLWDLAAGKTLTTLTHHKKTVRALSLHPDEFTFASGSSDNI 354

HSP 2 Score: 81.6481 bits (200), Expect = 6.738e-15
Identity = 52/200 (26.00%), Postives = 89/200 (44.50%), Query Frame = 3

Query:  258 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFSS 854
            ++   I G    +  + + P ++   +    R I++WDL++     +  GH     G+A  P    L + G D+ V  WD++      ++ GH   V ++  HP  D  +L +   DA  RVWD+  ++ V  L  H S V S+A+      +++   D  + LWDL       T+  + + V A+   P    F S SS
Sbjct:  154 TLMRVISGHLGWVRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLD--VLVTAGRDAVARVWDMRTRQNVHVLSGHKSTVASLAVQEFDPQVVTGSMDSTIRLWDLAAGKTLTTLTHHKKTVRALSLHPDEFTFASGSS 351

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.656e-21
Identity = 60/211 (28.44%), Postives = 105/211 (49.76%), Query Frame = 3

Query:  189 SSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-VTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 815
            S DG ++A A  + +I I    +   + T+EG  + I+ +A S D KL+ S+   + I++WD+ + K +++ KGH     G++ +P   L+ +   D  V +WDV+ G CT     H   V+ +  H + D +L+ SGS D TVR+WD    + + T+     + V+ +  + +G  +L+   D  + LW   +    L   T    E  C
Sbjct:   55 SPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGV--HFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYC 263

HSP 2 Score: 100.523 bits (249), Expect = 1.402e-20
Identity = 58/199 (29.15%), Postives = 98/199 (49.25%), Query Frame = 3

Query:  174 GPLVVSSDGSFI-----ACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWD 755
            GP  +SS  S++          ++ +I    N  +K T++G   +I+++  SPD K L S+   + I++W     K  R+ +GH      +A      L+ +A  D+ + +WDV+ G      KGHK  V  + F+P +  +L+ SGS D  VR+WD+   +C   +  H   VT +    DG+ ++S   D  V +WD
Sbjct:    4 GPASMSSSSSYLYQEQQQQQPQQTESIPQTPNYILKYTLKGHLKSISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQS--NLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWD 200

The following BLAST results are available for this feature:

BLAST of FC877825 vs. ExPASy Swiss-Prot

BLAST of FC877825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370


Match Name	E-value	Identity	Description
LIS1_PIG	1.956e-22	28.64	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_PANTR	1.956e-22	28.64	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_MOUSE	1.956e-22	28.64	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_HUMAN	1.956e-22	28.64	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_CHICK	1.956e-22	28.64	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_BOVIN	1.956e-22	28.64	Platelet-activating factor acetylhydrolase IB subu...	[more]
LIS1_PONAB	2.554e-22	29.13	Platelet-activating factor acetylhydrolase IB subu...	[more]
TAF5_YEAST	5.691e-22	33.13	Transcription initiation factor TFIID subunit 5 OS...	[more]
PRP46_SCHPO	7.432e-22	33.52	Pre-mRNA-splicing factor prp46 OS=Schizosaccharomy...	[more]
WDR5_DICDI	1.656e-21	28.44	WD repeat-containing protein 5 homolog OS=Dictyost...	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA65DB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC877825 ID=FC877825; Name=FC877825; organism=Citrus clementina; type=EST; length=923bp
CCACAGGCTCATTGATTCGCAGGTCACTGTCGCTCTCCTCGTTACAGGAA
AATCCGGGTTTCAGTCCTGACCCGATAAAAGAGTAATCTTGAGTTTACGG
GTCCGCAATGGCATCCCTACCACTAAAGAAGAGCTACGGATGCGAACCTG
TCTTACAACAGTTCTACGGCGGTGGGCCGTTGGTGGTTTCATCGGACGGC
TCATTCATCGCGTGTGCGTGCGGCGAGTCTATCAACATTGTGGACTTATC
AAATGCCTCCATAAAGTCAACAATTGAAGGCGGGTCGGATACAATCACGG
CCTTGGCCCTTAGTCCCGACGATAAGCTGCTCTTCTCTTCTGGTCACAGT
CGGGAAATTAGGGTTTGGGATTTATCAACACTAAAATGTTTGCGCTCCTG
GAAGGGCCATGACGGTCCTGCAATTGGAATGGCATGTCACCCATCCGGTG
GATTGCTTGCTACTGCAGGAGCTGATAGGAAAGTTCTTGTTTGGGATGTC
GATGGTGGCTTTTGCACTCATTACTTCAAAGGTCATAAGGGAGTTGTCAG
TAGTATCTTGTTTCATCCTGACACGGATAAATCTCTTCTTTTCTCTGGTA
GTGATGATGCAACTGTGCGAGTTTGGGATCTTTTAGCCAAGAAATGTGTT
GCAACTTTGGATAAGCATTTCTCAAGAGTTACTTCTATGGCTATAACTAG
TGATGGATCGGCATTGCTCAGTGCTGGAAGAGATAAGGTTGTAAACTTGT
GGGACCTTCGTGACTACAGTTGCAAGTTGACTGTGCCAACATATGAGATG
GTTGAAGCTGTGTGTGCCATTCCTCCTGGGAGTGCTTTTGATTCATTTTC
TAGTTCATACAATCAGCAGACTATAAAGAAAAAATGCAGGTCACTAGAAA
ATCATTTCATCACTGTCGGTGAA