FC877825

Overview
NameFC877825
Unique NameFC877825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: SMU1_MOUSE (WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 48/177 (27.12%), Postives = 73/177 (41.24%), Query Frame = 3
Query:  279 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH--------DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            G    +     SPD + L +      I VW+ +T K  +  K          D   + M       +LAT   D K+ VW +  G C   F + H   V+ + F  D+  S + S S D T+R+  L + K +     H S V     T DG  ++SA  D  V +W+++   C  T
Sbjct:  212 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDS--SQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNT 386          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: SMU1_HUMAN (WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 48/177 (27.12%), Postives = 73/177 (41.24%), Query Frame = 3
Query:  279 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH--------DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            G    +     SPD + L +      I VW+ +T K  +  K          D   + M       +LAT   D K+ VW +  G C   F + H   V+ + F  D+  S + S S D T+R+  L + K +     H S V     T DG  ++SA  D  V +W+++   C  T
Sbjct:  212 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDS--SQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNT 386          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: SMU1_CRIGR (WD40 repeat-containing protein SMU1 OS=Cricetulus griseus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 48/177 (27.12%), Postives = 73/177 (41.24%), Query Frame = 3
Query:  279 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH--------DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            G    +     SPD + L +      I VW+ +T K  +  K          D   + M       +LAT   D K+ VW +  G C   F + H   V+ + F  D+  S + S S D T+R+  L + K +     H S V     T DG  ++SA  D  V +W+++   C  T
Sbjct:  212 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDS--SQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNT 386          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: SMU1_BOVIN (WD40 repeat-containing protein SMU1 OS=Bos taurus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 48/177 (27.12%), Postives = 73/177 (41.24%), Query Frame = 3
Query:  279 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH--------DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            G    +     SPD + L +      I VW+ +T K  +  K          D   + M       +LAT   D K+ VW +  G C   F + H   V+ + F  D+  S + S S D T+R+  L + K +     H S V     T DG  ++SA  D  V +W+++   C  T
Sbjct:  212 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDS--SQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNT 386          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: CDC20_PIG (Cell division cycle protein 20 homolog OS=Sus scrofa GN=CDC20 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 48/169 (28.40%), Postives = 79/169 (46.75%), Query Frame = 3
Query:  267 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC----LRSWKGHDGPAIGMA-CHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLW 752
            +T+ G S  +  L  +PD + L S G+   + VW  +  +     L+++  H G    +A C     +LAT G  +DR + +W+V  G C      H  V S IL+ P   + +   G     + +W       VA L  H +RV S+ ++ DG+ + SA  D+ + LW
Sbjct:  303 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLW 470          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WSB2_MOUSE (WD repeat and SOCS box-containing protein 2 OS=Mus musculus GN=Wsb2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = 3
Query:  399 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTI 875
            W  H   A  ++C     +LAT   D ++ +W+V  G       GH+ VV  + F P +   +L S S D T+R+WDL    K +  L  H   V   +I+ D S L SA  +K V LW +R Y+    +  ++     C   P SA    ++SY+   I
Sbjct:  111 WARHHPQAPDVSCL----ILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSFTP-SGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSAL-LVTASYDTSVI 264          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: SMU1_XENTR (WD40 repeat-containing protein SMU1 OS=Xenopus tropicalis GN=smu1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 49/177 (27.68%), Postives = 72/177 (40.68%), Query Frame = 3
Query:  279 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH--------DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            G    +     SPD + L +      I VW+ +T K  +  K          D   + M       +LAT   D K+ VW +  G C   F + H   V+ + F  D   S + S S D T+RV  L + K +     H S V     T DG  ++SA  D  V +W+++   C  T
Sbjct:  212 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDC--SQILSASFDQTIRVHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNT 386          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: CDC20_RAT (Cell division cycle protein 20 homolog OS=Rattus norvegicus GN=Cdc20 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 48/169 (28.40%), Postives = 78/169 (46.15%), Query Frame = 3
Query:  267 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC----LRSWKGHDGPAIGMA-CHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLW 752
            +T+ G S  +  L  +PD + L S G+   + VW     +     L+++  H G    +A C     +LAT G  +DR + +W+V  G C      H  V S IL+ P   + +   G     + +W       VA L  H +RV S+ ++ DG+ + SA  D+ + LW
Sbjct:  303 ATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQTFTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLW 470          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: YN19_SCHPO (Uncharacterized WD repeat-containing protein C577.09 OS=Schizosaccharomyces pombe GN=SPBC577.09 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 70/272 (25.74%), Postives = 106/272 (38.97%), Query Frame = 3
Query:  207 IACACGESINIVDLSNASIKSTIEGGSDTITALALSP--------------DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP--SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVATLD-------------KHFSRVTSMAITSDGSALLSAGRDKVVNLWD-------LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIKKKCRSLENHFI 911
            ++     SIN+ DL N   K   +   DT+ A+                  D+ +  SS     ++VWD+STL+   ++   D      A  P  S  L+ATA     + + D+  G  TH   GH G V ++ + P  ++ +L SGS D T R+WD+       A +D              H+  V  +A TSD   L S G D  + +W+       LR++   +   T       C I P    D F    N          LE  F+
Sbjct:   64 VSGGANSSINVWDLQNIDQKEDEDLILDTLNAVPARTSHKFGITDLHWFPFDNGIFTSSSFDHTLKVWDVSTLQEAYTFTMED-MIYSHAWSPIASHCLIATAYRSSSIRLCDMQSGSYTHSLSGHTGNVLAVDWCP-KNEFVLASGSADGTCRLWDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHPCMIQPSMDSDVFVLFPNDDGSLALLNLLEGSFV 333          
BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: SMU1_CHICK (WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 48/177 (27.12%), Postives = 73/177 (41.24%), Query Frame = 3
Query:  279 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH--------DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            G    +     SPD + L +      I VW+ +T K  +  K          D   + M       +LAT   D K+ VW +  G C   F + H   V+ + F  D+  S + S S D T+R+  L + K +     H S V     T DG  ++SA  D  V +W+++   C  T
Sbjct:  212 GQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDS--SQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKVWNVKTTECSNT 386          
The following BLAST results are available for this feature:
BLAST of FC877825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
SMU1_MOUSE4.519e-1127.12WD40 repeat-containing protein SMU1 OS=Mus musculu... [more]
SMU1_HUMAN4.519e-1127.12WD40 repeat-containing protein SMU1 OS=Homo sapien... [more]
SMU1_CRIGR4.519e-1127.12WD40 repeat-containing protein SMU1 OS=Cricetulus ... [more]
SMU1_BOVIN4.519e-1127.12WD40 repeat-containing protein SMU1 OS=Bos taurus ... [more]
CDC20_PIG4.519e-1128.40Cell division cycle protein 20 homolog OS=Sus scro... [more]
WSB2_MOUSE5.903e-1130.63WD repeat and SOCS box-containing protein 2 OS=Mus... [more]
SMU1_XENTR5.903e-1127.68WD40 repeat-containing protein SMU1 OS=Xenopus tro... [more]
CDC20_RAT5.903e-1128.40Cell division cycle protein 20 homolog OS=Rattus n... [more]
YN19_SCHPO7.709e-1125.74Uncharacterized WD repeat-containing protein C577.... [more]
SMU1_CHICK7.709e-1127.12WD40 repeat-containing protein SMU1 OS=Gallus gall... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877825 ID=FC877825; Name=FC877825; organism=Citrus clementina; type=EST; length=923bp
CCACAGGCTCATTGATTCGCAGGTCACTGTCGCTCTCCTCGTTACAGGAA
AATCCGGGTTTCAGTCCTGACCCGATAAAAGAGTAATCTTGAGTTTACGG
GTCCGCAATGGCATCCCTACCACTAAAGAAGAGCTACGGATGCGAACCTG
TCTTACAACAGTTCTACGGCGGTGGGCCGTTGGTGGTTTCATCGGACGGC
TCATTCATCGCGTGTGCGTGCGGCGAGTCTATCAACATTGTGGACTTATC
AAATGCCTCCATAAAGTCAACAATTGAAGGCGGGTCGGATACAATCACGG
CCTTGGCCCTTAGTCCCGACGATAAGCTGCTCTTCTCTTCTGGTCACAGT
CGGGAAATTAGGGTTTGGGATTTATCAACACTAAAATGTTTGCGCTCCTG
GAAGGGCCATGACGGTCCTGCAATTGGAATGGCATGTCACCCATCCGGTG
GATTGCTTGCTACTGCAGGAGCTGATAGGAAAGTTCTTGTTTGGGATGTC
GATGGTGGCTTTTGCACTCATTACTTCAAAGGTCATAAGGGAGTTGTCAG
TAGTATCTTGTTTCATCCTGACACGGATAAATCTCTTCTTTTCTCTGGTA
GTGATGATGCAACTGTGCGAGTTTGGGATCTTTTAGCCAAGAAATGTGTT
GCAACTTTGGATAAGCATTTCTCAAGAGTTACTTCTATGGCTATAACTAG
TGATGGATCGGCATTGCTCAGTGCTGGAAGAGATAAGGTTGTAAACTTGT
GGGACCTTCGTGACTACAGTTGCAAGTTGACTGTGCCAACATATGAGATG
GTTGAAGCTGTGTGTGCCATTCCTCCTGGGAGTGCTTTTGATTCATTTTC
TAGTTCATACAATCAGCAGACTATAAAGAAAAAATGCAGGTCACTAGAAA
ATCATTTCATCACTGTCGGTGAA
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