FC877825 | Citrus Genome Database

Overview


Name	FC877825
Unique Name	FC877825
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	923

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: PRP46_CRYNE (Pre-mRNA-splicing factor PRP46 OS=Cryptococcus neoformans GN=PRP46 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.956e-20
Identity = 60/172 (34.88%), Postives = 88/172 (51.16%), Query Frame = 3

Query:  231 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI--TSDGSALLSAGRDKV 740
            I I DL++  +K ++ G   TI  LA+S     LFS    + ++ WDL T K +R + GH      ++ HP+  +L T G D  V VWD+          GH   V  +    D+D  ++ SGS D+TVR+WDL A KC+ TL  H   V ++AI  T    A  S+G + +
Sbjct:  206 IKIWDLASGELKLSLTGHISTIRGLAVSDRHPYLFSCAEDKMVKCWDLETNKVIRHYHGHFSGVYSLSVHPTLDVLVTGGRDASVRVWDMRTRANIFTLTGHTSTVGDVKTQ-DSDPQII-SGSMDSTVRLWDLAAGKCMNTLTHHKKSVRALAIHPTEYSFASASSGGNNI 375

HSP 2 Score: 91.6633 bits (226), Expect = 6.511e-18
Identity = 63/207 (30.43%), Postives = 96/207 (46.38%), Query Frame = 3

Query:  273 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFSSSYNQQTIKK-KC 887
            I G    + A+A+ P ++   +    R I++WDL++ +   S  GH     G+A       L +   D+ V  WD++      ++ GH   V S+  HP  D  +L +G  DA+VRVWD+  +  + TL  H S V  +        ++S   D  V LWDL    C  T+  + + V A+   P   +F S SS  N   IKK KC
Sbjct:  178 ISGHMGWVRAVAMDPGNQWFATGAGDRVIKIWDLASGELKLSLTGHISTIRGLAVSDRHPYLFSCAEDKMVKCWDLETNKVIRHYHGHFSGVYSLSVHPTLD--VLVTGGRDASVRVWDMRTRANIFTLTGHTSTVGDVKTQDSDPQIISGSMDSTVRLWDLAAGKCMNTLTHHKKSVRALAIHPTEYSFASASSGGN--NIKKWKC 380

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.085e-20
Identity = 57/200 (28.50%), Postives = 100/200 (50.00%), Query Frame = 3

Query:  189 SSDGSFIACACGESINIV-DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            S +G ++A +  +++ I+    +   K T+ G S  I+ +A S D   L S+   + +++WD+ + KCL++ KGH         +P   L+ +   D  V +W+V  G C      H   +S++ FH   + SL+ SGS D   R+WD  + +C+ TL D+    V+ +  + +G  +L+A  D  + LWD     C  T
Sbjct:   48 SPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFH--CNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLKT 245

HSP 2 Score: 92.4337 bits (228), Expect = 3.817e-18
Identity = 51/178 (28.65%), Postives = 88/178 (49.44%), Query Frame = 3

Query:  252 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTV 785
            N +++ T+ G S  I+++  SP+ + L SS     I +W     KC ++  GH      +A       L +A  D+ + +WDV  G C    KGH   V    F+P +  +L+ SGS D +V++W++   KC+ TL  H   ++++    +GS ++S   D +  +WD     C  T+
Sbjct:   28 NYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPS--NLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTL 203

HSP 3 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 56/195 (28.72%), Postives = 87/195 (44.62%), Query Frame = 3

Query:  180 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA-CHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAG--RDKVVNLW 752
            L+VS  GSF      ES+ I ++       T+   SD I+A+    +  L+ S  +    R+WD ++ +CLR+      P +      P+G  + TA  D  + +WD   G C   + GHK     I      T +  + SGS+D  V +W+L  K+ V  L  H   V S A     + + SA    DK + +W
Sbjct:  137 LIVS--GSF-----DESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLKTYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTENIIASAALENDKTIKIW 324

HSP 4 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 36/130 (27.69%), Postives = 63/130 (48.46%), Query Frame = 3

Query:  405 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTY 794
            GH      +   P+G  LA++ AD  +++W    G C     GH   +S + +   +D S L S SDD T+++WD+ + KC+ TL  H   V         + ++S   D+ V +W+++   C  T+  +
Sbjct:   37 GHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAW--SSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAH 164

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 57/175 (32.57%), Postives = 86/175 (49.14%), Query Frame = 3

Query:  258 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            S+  T +G   ++  LAL P   +L ++   +  ++W +     +   +GH     G+  HP+G  LA+ G D  V +WD +   C   F  HK  + S+ FH   +  ++ SGS D TVR+WDL A KC   L  H   V  +A     S+L +A  DK V++WD R   C  T
Sbjct:  317 SLNKTFKGHLLSVANLALHPTKPILVTASDDKTWKMWHMPGGDLIMCGEGHKDWVAGVDFHPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHLGE--VVASGSLDHTVRLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKTVSVWDARAGLCTQT 489

HSP 2 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 57/221 (25.79%), Postives = 89/221 (40.27%), Query Frame = 3

Query:  198 GSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFSS 854
            G+ +A   G+S + I D       +T       I ++      +++ S      +R+WDL   KC  + +GH      +A  P    LATA +D+ V VWD   G CT  + GH+   + + F  +   + L S   D  V++WD      VAT++              G  L  A  D  V  +   D   +  +  +E  V+AV   P G    S  S
Sbjct:  380 GTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHLGEVVASGSLDHTVRLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKTVSVWDARAGLCTQTYYGHQNSCNGVSF--NILGTQLASTDADGVVKLWDTRMTAEVATINTGKHPANKSCFDRSGQVLAVACDDGKVKAYSTTDGVLQAELAGHEDAVQAVLFDPAGQYLVSCGS 598

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 53/193 (27.46%), Postives = 96/193 (49.74%), Query Frame = 3

Query:  207 IACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTV 785
            ++ +  +S  + +  N ++K T+ G ++ ++++  SP+ + L SS   R I +W     K  R+  GH+     +A       L +A  D+ + +WD+  G C    KGH   V    F+P +  +L+ SGS D TV++W++   KC+ TL  H   V+++     GS ++S   D +  +WD     C  T+
Sbjct:   15 LSSSANQSKEVPENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYERTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPPS--NLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTL 205

HSP 2 Score: 91.2781 bits (225), Expect = 8.504e-18
Identity = 55/200 (27.50%), Postives = 97/200 (48.50%), Query Frame = 3

Query:  189 SSDGSFIACACGESINIV-DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            S +G ++A +  + + I+    +   + T+ G +  I+ +A S D   L S+   + +++WD+ + KCL++ KGH         +P   L+ +   D  V +W+V  G C      H   VS++  H +   SL+ SGS D   R+WD  + +C+ TL D     V+ +  + +G  +L+A  D  + LWD     C  T
Sbjct:   50 SPNGEWLASSSADRLIIIWGAYDGKYERTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAV--HFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKT 247

HSP 3 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 49/180 (27.22%), Postives = 81/180 (45.00%), Query Frame = 3

Query:  225 ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA-CHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAG--RDKVVNLW 752
            E++ I ++       T+   SD ++A+  +    L+ S  +    R+WD ++ +CL++    D P +      P+G  + TA  D  + +WD   G C   + GHK     I  +   T    + SGS+D  V +W+L  K+ V  L  H   V S A     + + SA    DK + LW
Sbjct:  147 ETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKLW 326

HSP 4 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 50/176 (28.41%), Postives = 83/176 (47.16%), Query Frame = 3

Query:  267 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTY 794
            +T E G D    LALS       S+  S+E+       LKC  +  GH      +   P+G  LA++ ADR +++W    G       GH   +S + +   +D S L S SDD T+++WD+ + KC+ TL  H + V         + ++S   D+ V +W+++   C  T+  +
Sbjct:    2 ATKESG-DAKAQLALSS------SANQSKEVPENPNYALKC--TLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYERTLYGHNLEISDVAW--SSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAH 166

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 57/200 (28.50%), Postives = 101/200 (50.50%), Query Frame = 3

Query:  189 SSDGSFIACACGESINIV-DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            S +G ++A +  +++ I+    + + K T+ G S  I+ +A S D   L S+   + ++VWD+ + KCL++ KGH         +P   L+ +   D  V +W+V  G C      H   +S++ F  + + SL+ SGS D   R+WD  + +C+ TL D+    V+ +  + +G  +L+A  D  + LWD     C  T
Sbjct:   48 SPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNF--NCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKT 245

HSP 2 Score: 91.2781 bits (225), Expect = 8.504e-18
Identity = 50/178 (28.09%), Postives = 87/178 (48.88%), Query Frame = 3

Query:  252 NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTV 785
            N +++ T+ G S  I+++  SP+ + L SS     I +W      C ++  GH      +A       L +A  D+ + VWD+  G C    KGH   V    F+P +  +L+ SGS D +V++W++   KC+ TL  H   ++++    +GS ++S   D +  +WD     C  T+
Sbjct:   28 NYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPS--NLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTL 203

HSP 3 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 55/195 (28.21%), Postives = 88/195 (45.13%), Query Frame = 3

Query:  180 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA-CHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAG--RDKVVNLW 752
            L+VS  GSF      ES+ I ++       T+   SD I+A+  + +  L+ S  +    R+WD ++ +CLR+      P +      P+G  + TA  D  + +WD   G C   + GHK     +      T +  + SGS+D  V +W+L  K+ V  L  H   V S A     + + SA    DK + +W
Sbjct:  137 LIVS--GSF-----DESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVW 324

HSP 4 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 37/130 (28.46%), Postives = 63/130 (48.46%), Query Frame = 3

Query:  405 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTY 794
            GH      +   P+G  LA++ AD  +++W    G C     GH   +S + +   +D S L S SDD T++VWD+ + KC+ TL  H   V         + ++S   D+ V +W+++   C  T+  +
Sbjct:   37 GHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAW--SSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAH 164

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 53/193 (27.46%), Postives = 96/193 (49.74%), Query Frame = 3

Query:  207 IACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTV 785
            ++ +  +S  + +  N ++K T+ G ++ ++++  SP+ + L SS   R I +W     K  ++  GH+     +A       L +A  D+ + +WDV  G C    KGH   V    F+P +  +L+ SGS D TV++W++   KC+ TL  H   V+++     GS ++S   D +  +WD     C  T+
Sbjct:   15 LSSSANQSKEVPENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPS--NLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTL 205

HSP 2 Score: 91.2781 bits (225), Expect = 8.504e-18
Identity = 55/200 (27.50%), Postives = 97/200 (48.50%), Query Frame = 3

Query:  189 SSDGSFIACACGESINIV-DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLT 782
            S +G ++A +  + + I+    +   + T+ G +  I+ +A S D   L S+   + +++WD+ + KCL++ KGH         +P   L+ +   D  V +W+V  G C      H   VS++  H +   SL+ SGS D   R+WD  + +C+ TL D     V+ +  + +G  +L+A  D  + LWD     C  T
Sbjct:   50 SPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAV--HFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKT 247

HSP 3 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 49/180 (27.22%), Postives = 81/180 (45.00%), Query Frame = 3

Query:  225 ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA-CHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAG--RDKVVNLW 752
            E++ I ++       T+   SD ++A+  +    L+ S  +    R+WD ++ +CL++    D P +      P+G  + TA  D  + +WD   G C   + GHK     I  +   T    + SGS+D  V +W+L  K+ V  L  H   V S A     + + SA    DK + LW
Sbjct:  147 ETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKLW 326

HSP 4 Score: 72.7886 bits (177), Expect = 3.130e-12
Identity = 42/153 (27.45%), Postives = 74/153 (48.37%), Query Frame = 3

Query:  336 SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTY 794
            S+  S+E+       LKC  +  GH      +   P+G  LA++ ADR +++W    G       GH   +S + +   +D S L S SDD T+++WD+ + KC+ TL  H + V         + ++S   D+ V +W+++   C  T+  +
Sbjct:   18 SANQSKEVPENPNYALKC--TLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAW--SSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAH 166

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: TAF73_SCHPO (Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe GN=taf73 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.550e-19
Identity = 57/204 (27.94%), Postives = 96/204 (47.06%), Query Frame = 3

Query:  189 SSDGSFIACACGES-INIVDLSNASI------------KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            S D S  A  C +S I++   +N               KS++ G +  +  +++SP  + + S       R+W   T   +  + GH+ P   +   P G   ATA  D+   +WDV+       F GH+  V  + FHP+   + L +GS D T R+WD+     V   + H S V+++ +++DG +L SA    ++ +WDLR
Sbjct:  358 SDDASMFALGCADSSIHLYSSTNNGPQPLVGSQNEPLQKSSLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGYYFATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFHPNA--AYLATGSSDHTTRMWDVRTGGTVRVFNAHHSPVSALCMSADGLSLASADESGIIKVWDLR 559

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 56/189 (29.63%), Postives = 96/189 (50.79%), Query Frame = 3

Query:  189 SSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLW 752
            S+DG F+A A  + SI +  +       ++   +  +     SPD +L+ S    + I++WD +  +C+ ++    G A  +  +PSG  +A+AG+D+ V VWDV       +++ H G V+ I FHP    + L + S D T+++ DLL  + + TL  H   V +++ +  G    S G D  V LW
Sbjct:  111 SADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHP--SDNYLVTASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQVLLW 297

HSP 2 Score: 82.8037 bits (203), Expect = 3.024e-15
Identity = 54/212 (25.47%), Postives = 93/212 (43.87%), Query Frame = 3

Query:  144 EPVLQQFYGGGPLVVSS-----DGSFIACACGESINIV-DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            +PVL++++ G    ++S     +G  +A A  ++  ++ +    +      G  D +T++  SP   LL S+   R +R+W          +K H  P   +     G  LATA  D+ + VW +      +    H   V    F PD    L+ S S+D T+++WD   K+CV            +     G+ + SAG D+ V +WD+R
Sbjct:    7 DPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDG--RLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVR 216

HSP 3 Score: 78.9518 bits (193), Expect = 4.367e-14
Identity = 46/166 (27.71%), Postives = 76/166 (45.78%), Query Frame = 3

Query:  276 EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSC 773
            +G    IT+L LSP+ K L ++     + +W+         + GH      +   P G LLA+A  DR V +W  D       FK H   V S+ F    D   L + S+D +++VW +  ++ + +L +H   V     + DG  ++S   DK + +WD  +  C
Sbjct:   15 KGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDF--SADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQC 178

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 56/189 (29.63%), Postives = 96/189 (50.79%), Query Frame = 3

Query:  189 SSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLW 752
            S+DG F+A A  + SI +  +       ++   +  +     SPD +L+ S    + I++WD +  +C+ ++    G A  +  +PSG  +A+AG+D+ V VWDV       +++ H G V+ I FHP    + L + S D T+++ DLL  + + TL  H   V +++ +  G    S G D  V LW
Sbjct:  111 SADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHP--SGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQVLLW 297

HSP 2 Score: 82.8037 bits (203), Expect = 3.024e-15
Identity = 54/212 (25.47%), Postives = 93/212 (43.87%), Query Frame = 3

Query:  144 EPVLQQFYGGGPLVVSS-----DGSFIACACGESINIV-DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            +PVL++++ G    ++S     +G  +A A  ++  ++ +    +      G  D +T++  SP   LL S+   R +R+W          +K H  P   +     G  LATA  D+ + VW +      +    H   V    F PD    L+ S S+D T+++WD   K+CV            +     G+ + SAG D+ V +WD+R
Sbjct:    7 DPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDG--RLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVR 216

HSP 3 Score: 78.9518 bits (193), Expect = 4.367e-14
Identity = 46/166 (27.71%), Postives = 76/166 (45.78%), Query Frame = 3

Query:  276 EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSC 773
            +G    IT+L LSP+ K L ++     + +W+         + GH      +   P G LLA+A  DR V +W  D       FK H   V S+ F    D   L + S+D +++VW +  ++ + +L +H   V     + DG  ++S   DK + +WD  +  C
Sbjct:   15 KGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDF--SADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQC 178

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.024e-19
Identity = 55/221 (24.89%), Postives = 100/221 (45.25%), Query Frame = 3

Query:  111 ASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGES--INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDY 767
            A  P K ++  + ++        +V+      +    G+   +++  ++  +   ++ G +  + ++  +  ++L+ +   S  +R+WDL   K LR+  GH      +  HP G  +A+   D  + +WDV    C   +KGH   V  + F P  D   L S SDD +V++WDL A K +A L +H   V  +    +   L S   D+ V  WDL  +
Sbjct:    3 APSPTKTTWKLQEIVAHGCSVSSVVLGRSSGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVESVRFNNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSP--DGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKF 221

HSP 2 Score: 91.2781 bits (225), Expect = 8.504e-18
Identity = 60/200 (30.00%), Postives = 94/200 (47.00%), Query Frame = 3

Query:  189 SSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVP 788
            +S+   +A +   S+ I DL  A I  T+ G    +++L   P  + + S      I++WD+    C+  +KGH      +   P G  LA+A  D  V +WD+  G        HKG V+ I FHP  ++ LL SGS D TVR WDL   + V   +     V ++  ++DG  +   G+D  + ++      C  TVP
Sbjct:   73 NSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHP--NEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKDS-LRVYGWEPDQCFDTVP 269

HSP 3 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 49/159 (30.82%), Postives = 71/159 (44.65%), Query Frame = 3

Query:  444 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPG----SAFDSFSSSYNQQTIKKKCRSLENH 905
            SG L+AT G D +V +W V+   C     GH   V S+ F+    + L+ +GS   ++R+WDL A K + TL  H + V+S+     G  + S   D  + LWD+R   C      + + V  +   P G    SA D  S      T  K    L  H
Sbjct:   32 SGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVESVRFN--NSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEH 188

The following BLAST results are available for this feature:

BLAST of FC877825 vs. ExPASy Swiss-Prot

BLAST of FC877825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370


Match Name	E-value	Identity	Description
PRP46_CRYNE	6.956e-20	34.88	Pre-mRNA-splicing factor PRP46 OS=Cryptococcus neo...	[more]
WDR5B_RAT	9.085e-20	28.50	WD repeat-containing protein 5B OS=Rattus norvegic...	[more]
PF20_CHLRE	1.187e-19	32.57	Flagellar WD repeat-containing protein Pf20 OS=Chl...	[more]
WDR5B_PONAB	1.550e-19	27.46	WD repeat-containing protein 5B OS=Pongo abelii PE...	[more]
WDR5B_MOUSE	1.550e-19	28.50	WD repeat-containing protein 5B OS=Mus musculus GN...	[more]
WDR5B_HUMAN	1.550e-19	27.46	WD repeat-containing protein 5B OS=Homo sapiens GN...	[more]
TAF73_SCHPO	1.550e-19	27.94	Transcription initiation factor TFIID subunit taf7...	[more]
WD51B_PONAB	2.024e-19	29.63	WD repeat-containing protein 51B OS=Pongo abelii G...	[more]
WD51B_HUMAN	2.024e-19	29.63	WD repeat-containing protein 51B OS=Homo sapiens G...	[more]
KTNB1_XENLA	2.024e-19	24.89	Katanin p80 WD40-containing subunit B1 OS=Xenopus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA65DB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC877825 ID=FC877825; Name=FC877825; organism=Citrus clementina; type=EST; length=923bp
CCACAGGCTCATTGATTCGCAGGTCACTGTCGCTCTCCTCGTTACAGGAA
AATCCGGGTTTCAGTCCTGACCCGATAAAAGAGTAATCTTGAGTTTACGG
GTCCGCAATGGCATCCCTACCACTAAAGAAGAGCTACGGATGCGAACCTG
TCTTACAACAGTTCTACGGCGGTGGGCCGTTGGTGGTTTCATCGGACGGC
TCATTCATCGCGTGTGCGTGCGGCGAGTCTATCAACATTGTGGACTTATC
AAATGCCTCCATAAAGTCAACAATTGAAGGCGGGTCGGATACAATCACGG
CCTTGGCCCTTAGTCCCGACGATAAGCTGCTCTTCTCTTCTGGTCACAGT
CGGGAAATTAGGGTTTGGGATTTATCAACACTAAAATGTTTGCGCTCCTG
GAAGGGCCATGACGGTCCTGCAATTGGAATGGCATGTCACCCATCCGGTG
GATTGCTTGCTACTGCAGGAGCTGATAGGAAAGTTCTTGTTTGGGATGTC
GATGGTGGCTTTTGCACTCATTACTTCAAAGGTCATAAGGGAGTTGTCAG
TAGTATCTTGTTTCATCCTGACACGGATAAATCTCTTCTTTTCTCTGGTA
GTGATGATGCAACTGTGCGAGTTTGGGATCTTTTAGCCAAGAAATGTGTT
GCAACTTTGGATAAGCATTTCTCAAGAGTTACTTCTATGGCTATAACTAG
TGATGGATCGGCATTGCTCAGTGCTGGAAGAGATAAGGTTGTAAACTTGT
GGGACCTTCGTGACTACAGTTGCAAGTTGACTGTGCCAACATATGAGATG
GTTGAAGCTGTGTGTGCCATTCCTCCTGGGAGTGCTTTTGATTCATTTTC
TAGTTCATACAATCAGCAGACTATAAAGAAAAAATGCAGGTCACTAGAAA
ATCATTTCATCACTGTCGGTGAA