FC877825 | Citrus Genome Database

Overview


Name	FC877825
Unique Name	FC877825
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	923

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig6561	contig	Ccv1_Contig6561:107..1029.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 56/203 (27.59%), Postives = 101/203 (49.75%), Query Frame = 3

Query:  192 SDG-SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLW----DLRDYSCKLTV 785
            SDG SF+  +  +++ +          ++    + +     SPD +L+ S+   + +++WD ++ +C+ S+  H G    +  HPSG  +A AG D  V VWDV       +++ H   V+++ FHP    + L + S D+T+++ DL+  + + TL  H    T++A +  G    S G D+ V +W    D+ DY   L V
Sbjct:  113 SDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHP--SGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDYGEVLRV 313

HSP 2 Score: 78.5666 bits (192), Expect = 5.704e-14
Identity = 49/172 (28.49%), Postives = 78/172 (45.35%), Query Frame = 3

Query:  258 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSC 773
            S++   +G  D +T++  S + K L S      + VW +        + GH      +   PSG LLA+   D+ V +W  +    +  F+ H   V S+  H  +D     + SDD TV+VW    +K + +L +H + V     + DG  ++SA  DK V LWD     C
Sbjct:   10 SLERHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSV--HFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSREC 179

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 64/215 (29.77%), Postives = 85/215 (39.53%), Query Frame = 3

Query:  237 IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPA---------------------------------------IGMAC---HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWD 755
            I+D   AS    + G S  +   + SPD   L SS     +R+W L T  CL  +KGH+ P                                          + C   HP+   +AT  ADR V +WDV  G C   F GHKG + S+ F P  +   L +G+ D  V +WD+     V  L  H   V S+  + DG  L S   D  V LWD
Sbjct:  528 IMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP--NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 740

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 64/215 (29.77%), Postives = 85/215 (39.53%), Query Frame = 3

Query:  237 IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPA---------------------------------------IGMAC---HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWD 755
            I+D   AS    + G S  +   + SPD   L SS     +R+W L T  CL  +KGH+ P                                          + C   HP+   +AT  ADR V +WDV  G C   F GHKG + S+ F P  +   L +G+ D  V +WD+     V  L  H   V S+  + DG  L S   D  V LWD
Sbjct:  527 IMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP--NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 739

HSP 2 Score: 79.337 bits (194), Expect = 3.344e-14
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 3

Query:  315 PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 635
            P+   + +    R +R+WD+    C+R + GH GP   +   P+G  LAT   D +VL+WD+  G      KGH   V S+ F    D  +L SGS D TVR+WD +
Sbjct:  637 PNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRF--SRDGEILASGSMDNTVRLWDAI 741

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 49/179 (27.37%), Postives = 85/179 (47.49%), Query Frame = 3

Query:  231 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDY 767
            +N+  ++  +   ++ G +  + ++ L+  ++L+ +   S  IRVWDL   K LR+  GH      +  HP G  +A+   D  + +WD+    C   ++GH   V  + F P  D   L S +DD TV++WDL A K ++    H   V  +    +   L S   D+ +  WDL  +
Sbjct:   45 VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP--DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKF 221

HSP 2 Score: 92.4337 bits (228), Expect = 3.817e-18
Identity = 55/171 (32.16%), Postives = 82/171 (47.95%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKV 740
            SI + DL  A I  T+ G    I +L   P  + + S      I++WD+    C+  ++GH      +   P G  LA+A  D  V +WD+  G     F GH G V+ + FHP  ++ LL SGS D T+R WDL   + V+ ++     V S+    DG  L S  +D +
Sbjct:   86 SIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP--NEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSL 254

HSP 3 Score: 83.9593 bits (206), Expect = 1.358e-15
Identity = 50/170 (29.41%), Postives = 85/170 (50.00%), Query Frame = 3

Query:  198 GSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 704
            G F+A    ++ I + D+          G S  +  L  SPD K L S+     +++WDL+  K +  + GH GP   +  HP+  LLA+  +DR +  WD++        +G  G V S+LF+P  D   L+SG  D ++RV+    ++C   +  ++ +V  +AI +D
Sbjct:  117 GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP--DGCCLYSGCQD-SLRVYGWEPERCFDVVLVNWGKVADLAICND 283

HSP 4 Score: 82.0333 bits (201), Expect = 5.159e-15
Identity = 42/145 (28.97%), Postives = 65/145 (44.83%), Query Frame = 3

Query:  324 KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDL 758
            +LL + G    + +W ++   C+ S  GH  P   +  +    L+        + VWD++         GHK  + S+ FHP  +   + SGS D  +++WD+  K CV     H   V  +  + DG  L SA  D  V LWDL
Sbjct:   34 RLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGE--FVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDL 176

HSP 5 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 3

Query:  444 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSC 773
            SG LLAT G D +V +W ++   C     GH   V S+  +  T + L+ +GS   ++RVWDL A K + TL  H + + S+     G  + S  +D  + LWD+R   C
Sbjct:   32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLN--TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGC 139

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 49/179 (27.37%), Postives = 85/179 (47.49%), Query Frame = 3

Query:  231 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDY 767
            +N+  ++  +   ++ G +  + ++ L+  ++L+ +   S  IRVWDL   K LR+  GH      +  HP G  +A+   D  + +WD+    C   ++GH   V  + F P  D   L S +DD TV++WDL A K ++    H   V  +    +   L S   D+ +  WDL  +
Sbjct:   45 VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP--DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKF 221

HSP 2 Score: 92.4337 bits (228), Expect = 3.817e-18
Identity = 55/171 (32.16%), Postives = 82/171 (47.95%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKV 740
            SI + DL  A I  T+ G    I +L   P  + + S      I++WD+    C+  ++GH      +   P G  LA+A  D  V +WD+  G     F GH G V+ + FHP  ++ LL SGS D T+R WDL   + V+ ++     V S+    DG  L S  +D +
Sbjct:   86 SIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP--NEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSL 254

HSP 3 Score: 83.9593 bits (206), Expect = 1.358e-15
Identity = 50/170 (29.41%), Postives = 85/170 (50.00%), Query Frame = 3

Query:  198 GSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 704
            G F+A    ++ I + D+          G S  +  L  SPD K L S+     +++WDL+  K +  + GH GP   +  HP+  LLA+  +DR +  WD++        +G  G V S+LF+P  D   L+SG  D ++RV+    ++C   +  ++ +V  +AI +D
Sbjct:  117 GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP--DGCCLYSGCQD-SLRVYGWEPERCFDVVLVNWGKVADLAICND 283

HSP 4 Score: 82.0333 bits (201), Expect = 5.159e-15
Identity = 42/145 (28.97%), Postives = 65/145 (44.83%), Query Frame = 3

Query:  324 KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDL 758
            +LL + G    + +W ++   C+ S  GH  P   +  +    L+        + VWD++         GHK  + S+ FHP  +   + SGS D  +++WD+  K CV     H   V  +  + DG  L SA  D  V LWDL
Sbjct:   34 RLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGE--FVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDL 176

HSP 5 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 3

Query:  444 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSC 773
            SG LLAT G D +V +W ++   C     GH   V S+  +  T + L+ +GS   ++RVWDL A K + TL  H + + S+     G  + S  +D  + LWD+R   C
Sbjct:   32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLN--TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGC 139

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.452e-19
Identity = 56/215 (26.05%), Postives = 98/215 (45.58%), Query Frame = 3

Query:  210 ACACGESINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS------------------LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYE 797
            +C+   SI + D   +     T+ G    ++++A  P    + S+   R I++W+++T  C++++ GH      +  H  G + AT   D+ + VW  +   C    + H+  V  I + P+   S                   L SGS D T+R+WD+    C+ TL  H + V  +A    G  L+SA  DK + +WDLR+  C  T+  ++
Sbjct:  167 SCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQ 381

HSP 2 Score: 93.9745 bits (232), Expect = 1.312e-18
Identity = 66/259 (25.48%), Postives = 114/259 (44.02%), Query Frame = 3

Query:  228 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL-STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSA--------------------LLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFSSSYNQQTIK------KKCRS---LENHFIT 914
            +I I D      + +++G +D++  +A     KLL S      I++WD   + +C+++  GHD     +A  P+G  + +A  DR + +W+V  G+C   + GH+  V  +  H   + S+  + S+D T+RVW   +K C   L  H   V  +A   + +A                    L S  RDK + +WD+    C LT+  ++      A  PG  +    S+ + +TI+      K+C        HF T
Sbjct:  131 TIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVH--IEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKY--LVSASDDKTIRVWDLRNKRCMKTLYAHQHFCT 385

HSP 3 Score: 90.5077 bits (223), Expect = 1.450e-17
Identity = 56/193 (29.02%), Postives = 88/193 (45.60%), Query Frame = 3

Query:  264 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSA 836
            K ++ G   +IT +   P   L+ S+     IR+WD  T +  RS KGH      +A    G LLA+  AD  + +WD    + C     GH   VSS+ F P  D   + S S D T+++W++    CV T   H   V  + +  +GS   +   D+ + +W      CK+ +  +E  VE +   P  +A
Sbjct:  101 KFSLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGD--YVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAA 291

HSP 4 Score: 77.7962 bits (190), Expect = 9.729e-14
Identity = 53/209 (25.36%), Postives = 88/209 (42.11%), Query Frame = 3

Query:  198 GSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-------------GPAIGMAC-------HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLR 761
            G ++  A  + +I + +++      T  G  + +  + +  +  +  +  + + IRVW  ++  C    + H+               AI  A        H  G  LA+   D+ + +WDV  G C     GH   V  + FHP      L S SDD T+RVWDL  K+C+ TL  H    TS+        ++S   D+ V +W+ R
Sbjct:  205 GDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGG--KYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVWECR 411

HSP 5 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 49/169 (28.99%), Postives = 75/169 (44.38%), Query Frame = 3

Query:  186 VSSDGS-FIACACGESINIVDLSNASIKSTIEGGSDTITALALSP-------------DDK-------LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 629
            V  +GS F  C+  ++I +   ++   K  +     T+  +A +P             D+K        L S    + IR+WD+S   CL +  GHD    G+A HP G  L +A  D+ + VWD+    C      H+   +SI FH       + SGS D TV+VW+
Sbjct:  243 VHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFH--KAHPYVISGSVDQTVKVWE 409

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 56/204 (27.45%), Postives = 100/204 (49.02%), Query Frame = 3

Query:  192 SDG-SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLW----DLRDYSCKLTVP 788
            SDG SF+  +  +++ +          ++    + +     SPD +L+ S+   + +++WD S+ +C+ S+  H G    +  HPSG  +A AG D  V VWDV       +++ H   V+ + FHP    + L + S D+T+++ DL+  + + TL  H    T++A +  G    S G D+ V +W    D+ D+     VP
Sbjct:  113 SDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHP--SGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVP 314

HSP 2 Score: 77.7962 bits (190), Expect = 9.729e-14
Identity = 49/172 (28.49%), Postives = 77/172 (44.77%), Query Frame = 3

Query:  258 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSC 773
            S++   +G  D +T +  S + K L S      + VW +        + GH      +   PSG LLA+   D+ V +W  +    +  F+ H   V S+  H  +D     + SDD TV+VW    +K + +L +H + V     + DG  ++SA  DK V LWD     C
Sbjct:   10 SLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSV--HFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSREC 179

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 54/196 (27.55%), Postives = 86/196 (43.88%), Query Frame = 3

Query:  186 VSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSC 773
            ++     ++C+   SI   DL + +     +G +  +  L +SP      S  H R  R+W       LR + GH      +  HP+   LAT   D+ V +W    G     F GH+G V S+ F P  +   L S  +D  +++WDL +      L  H   +TS+  + D   + SA  D  V +WD+R+  C
Sbjct:  351 LADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSP--NGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYC 544

HSP 2 Score: 79.337 bits (194), Expect = 3.344e-14
Identity = 51/184 (27.72%), Postives = 77/184 (41.85%), Query Frame = 3

Query:  207 IACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDL 758
            +AC   E  +  D +  +    + G    + +     D   L S      IR WDL +      ++GH  P   +   P     A+   DR   +W  D  +    + GH   V  + FHP++  + L +GS D TVR+W       V     H   V S+A + +G  L SAG D+ + LWDL
Sbjct:  316 LACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNS--NYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDL 497

HSP 3 Score: 77.7962 bits (190), Expect = 9.729e-14
Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 3

Query:  294 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 689
            +  +   P+   L +    + +R+W       +R + GH GP + +A  P+G  LA+AG D+++ +WD+  G      +GH   ++S+ F PD+   L+ S S D +VRVWD+    C A  D   S +  +
Sbjct:  429 VDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDS--GLIASASMDNSVRVWDIRNTYCSAPADGSSSELVGV 558

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBR (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 55/186 (29.57%), Postives = 86/186 (46.24%), Query Frame = 3

Query:  273 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 824
            +EG S  ++ +ALS +     S+     +R+W+L   +C   + GH    + +A  P    + + G D  + VW+V G  C H      H   VS + F P  D  ++ SG  D  V+VWDL   + V  L  H + VTS+ ++ DGS   S+ +D V  LWDL        +     +  +C  P
Sbjct:   63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSP 247

[Close]

BLAST of FC877825 vs. ExPASy Swiss-Prot
Match: GBLP_TRYBB (Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 55/186 (29.57%), Postives = 86/186 (46.24%), Query Frame = 3

Query:  273 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 824
            +EG S  ++ +ALS +     S+     +R+W+L   +C   + GH    + +A  P    + + G D  + VW+V G  C H      H   VS + F P  D  ++ SG  D  V+VWDL   + V  L  H + VTS+ ++ DGS   S+ +D V  LWDL        +     +  +C  P
Sbjct:   63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSP 247

The following BLAST results are available for this feature:

BLAST of FC877825 vs. ExPASy Swiss-Prot

BLAST of FC877825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370


Match Name	E-value	Identity	Description
WD51A_BOVIN	2.643e-19	27.59	WD repeat-containing protein 51A OS=Bos taurus GN=...	[more]
TAF5_MOUSE	2.643e-19	29.77	Transcription initiation factor TFIID subunit 5 OS...	[more]
TAF5_HUMAN	2.643e-19	29.77	Transcription initiation factor TFIID subunit 5 OS...	[more]
KTNB1_MOUSE	2.643e-19	27.37	Katanin p80 WD40-containing subunit B1 OS=Mus musc...	[more]
KTNB1_HUMAN	2.643e-19	27.37	Katanin p80 WD40-containing subunit B1 OS=Homo sap...	[more]
LIS1_DROME	3.452e-19	26.05	Lissencephaly-1 homolog OS=Drosophila melanogaster...	[more]
WD51A_HUMAN	4.509e-19	27.45	WD repeat-containing protein 51A OS=Homo sapiens G...	[more]
TAF5L_HUMAN	4.509e-19	27.55	TAF5-like RNA polymerase II p300/CBP-associated fa...	[more]
GBLP_TRYBR	4.509e-19	29.57	Guanine nucleotide-binding protein subunit beta-li...	[more]
GBLP_TRYBB	4.509e-19	29.57	Guanine nucleotide-binding protein subunit beta-li...	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA65DB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC877825 ID=FC877825; Name=FC877825; organism=Citrus clementina; type=EST; length=923bp
CCACAGGCTCATTGATTCGCAGGTCACTGTCGCTCTCCTCGTTACAGGAA
AATCCGGGTTTCAGTCCTGACCCGATAAAAGAGTAATCTTGAGTTTACGG
GTCCGCAATGGCATCCCTACCACTAAAGAAGAGCTACGGATGCGAACCTG
TCTTACAACAGTTCTACGGCGGTGGGCCGTTGGTGGTTTCATCGGACGGC
TCATTCATCGCGTGTGCGTGCGGCGAGTCTATCAACATTGTGGACTTATC
AAATGCCTCCATAAAGTCAACAATTGAAGGCGGGTCGGATACAATCACGG
CCTTGGCCCTTAGTCCCGACGATAAGCTGCTCTTCTCTTCTGGTCACAGT
CGGGAAATTAGGGTTTGGGATTTATCAACACTAAAATGTTTGCGCTCCTG
GAAGGGCCATGACGGTCCTGCAATTGGAATGGCATGTCACCCATCCGGTG
GATTGCTTGCTACTGCAGGAGCTGATAGGAAAGTTCTTGTTTGGGATGTC
GATGGTGGCTTTTGCACTCATTACTTCAAAGGTCATAAGGGAGTTGTCAG
TAGTATCTTGTTTCATCCTGACACGGATAAATCTCTTCTTTTCTCTGGTA
GTGATGATGCAACTGTGCGAGTTTGGGATCTTTTAGCCAAGAAATGTGTT
GCAACTTTGGATAAGCATTTCTCAAGAGTTACTTCTATGGCTATAACTAG
TGATGGATCGGCATTGCTCAGTGCTGGAAGAGATAAGGTTGTAAACTTGT
GGGACCTTCGTGACTACAGTTGCAAGTTGACTGTGCCAACATATGAGATG
GTTGAAGCTGTGTGTGCCATTCCTCCTGGGAGTGCTTTTGATTCATTTTC
TAGTTCATACAATCAGCAGACTATAAAGAAAAAATGCAGGTCACTAGAAA
ATCATTTCATCACTGTCGGTGAA